Gene Information

Name : L483_32095 (L483_32095)
Accession : YP_008098152.1
Strain : Pseudomonas putida H8234
Genome accession: NC_021491
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 6802242 - 6802919 bp
Length : 678 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence : 
ATGAAATTACTCGTAGCCGAAGATGAGCCGAAAACCGGTGTCTACCTCCAGCAAGGCCTAACAGAGGCTGGCTTCACTGT
AGACCGGGTGATGACAGGCACTGACGCCCTGCAACAGGCGCAGAGCGAAGCGTATGACTTGCTGATCTTGGACGTAATGA
TGCCGGGGCTCGATGGCTGGGAGGTCCTGCGCAAGATCCGGGCAGCGGGGAAAGACGTGCCGGTCCTCTTTCTCACGGCC
CGTGATGGCGTAGATGATCGCGTTAAAGGCTTGGAGCTGGGTGCTGATGACTACCTTGTGAAGCCCTTTGCGTTCTCTGA
GCTGTTGGCTCGGGTCCGCACACTGCTGCGCAGAGGCAACGGTGGTTCTGCTCAAACCACCATGAAGATGGCGGACCTTG
AGGTTGACCTGCTCAAGCGCCGGGCTACGCGAAACGGCAAGCGGATCGACCTTACTGCCAAGGAGTTTGCCCTTTTGGAG
CTGCTCATGCGCCGACGCGGGGAGGTGCTCCCCAAGTCGCTGATCGCTTCTCAGGTCTGGGACATGAACTTCGACAGTGA
CACCAACGTGATCGAGGTCGCGATTCGCCGACTGCGGGCCAAGATTGATGACGACTTCGCGCCAAAGCTCATCCATACCG
CCCGAGGCATGGGCTACATGATGGATGTGGCAGAGTGA

Protein sequence : 
MKLLVAEDEPKTGVYLQQGLTEAGFTVDRVMTGTDALQQAQSEAYDLLILDVMMPGLDGWEVLRKIRAAGKDVPVLFLTA
RDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGNGGSAQTTMKMADLEVDLLKRRATRNGKRIDLTAKEFALLE
LLMRRRGEVLPKSLIASQVWDMNFDSDTNVIEVAIRRLRAKIDDDFAPKLIHTARGMGYMMDVAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-56 57
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-55 55

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
L483_32095 YP_008098152.1 transcriptional regulator BAC0638 Protein 5e-82 84
L483_32095 YP_008098152.1 transcriptional regulator BAC0083 Protein 1e-88 83
L483_32095 YP_008098152.1 transcriptional regulator BAC0197 Protein 1e-71 66
L483_32095 YP_008098152.1 transcriptional regulator BAC0111 Protein 5e-72 62
L483_32095 YP_008098152.1 transcriptional regulator BAC0308 Protein 2e-68 61
L483_32095 YP_008098152.1 transcriptional regulator BAC0125 Protein 8e-68 60
L483_32095 YP_008098152.1 transcriptional regulator BAC0347 Protein 3e-66 58
L483_32095 YP_008098152.1 transcriptional regulator NC_002516.2.879194.p Protein 2e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
L483_32095 YP_008098152.1 transcriptional regulator VFG0596 Protein 8e-57 57
L483_32095 YP_008098152.1 transcriptional regulator VFG1390 Protein 1e-43 47
L483_32095 YP_008098152.1 transcriptional regulator VFG1389 Protein 5e-40 46
L483_32095 YP_008098152.1 transcriptional regulator VFG1386 Protein 7e-38 42