|
Name : L483_26250 (L483_26250) Accession : YP_008096996.1 Strain : Pseudomonas putida H8234 Genome accession: NC_021491 Putative virulence/resistance : Virulence Product : transcriptional regulator Function : - COG functional category : - COG ID : - EC number : - Position : 5556373 - 5557047 bp Length : 675 bp Strand : + Note : induced by CusR in the presence of copper; YedW induces the expression of the upstream gene yedV (encoding a sensor kinase) as well as yedW; yedVW is one of four copper regulons found in E. coli; part of the copper homeostasis mechanism; confers resistanc DNA sequence : ATGCGCCTACTGATCATCGAGGACGAGCTGCGTACCGCCGATTACCTGCAACAAGGCCTGCGTGAAAACGGCTACGTGGT CGACTGCGCCCACACCGGCACCGACGGCCTGCACCTGGCCCGCCAACAGCCCTATGACCTGGTCATCCTCGATGTCAACC TGCCTGAAATCGATGGCTGGACCGTGCTGCAGCGGCTGCGAGCCGAATCGGCCACGCGCATCATGATGCTTACCGCCCAC GGTCGCCTGGCCGACCGGGTCAAAGGCCTGGACCTGGGCGCCGACGACTACCTGCTCAAGCCGTTCGAATTCCCTGAACT TCTGGCGCGCATCCGCAGCCTGCTGCGGCGTAACGACCAGCAACTGCAGCCCAGCACCCTGCGCGTCGCCGACCTGGAAC TGGACCCTGGCCGGCACCGCGCCTACCGCGCCGGGCAACGCATCGACCTGACCGCCAAGGAGTTCGCCCTGCTGCACCTG CTGATGCGCCAGACTGGCGAAGTGCTTTCGCGCACTCAGATCATCTCCTTGGTATGGGACATGAATTTCGACTGCGACAC CAACGTGGTCGAGGTTTCGATCCGCCGCCTGCGGGCGAAGATCGACGACCCGTTCGACAACAAGCTCATCCATACCCTGC GCGGCGTAGGCTATGTCCTTGAGGCCCGCGTTTGA Protein sequence : MRLLIIEDELRTADYLQQGLRENGYVVDCAHTGTDGLHLARQQPYDLVILDVNLPEIDGWTVLQRLRAESATRIMMLTAH GRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRRNDQQLQPSTLRVADLELDPGRHRAYRAGQRIDLTAKEFALLHL LMRQTGEVLSRTQIISLVWDMNFDCDTNVVEVSIRRLRAKIDDPFDNKLIHTLRGVGYVLEARV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| copR | NP_460069.2 | transcriptional regulatory protein YedW | Not tested | SPI-5 | Protein | 1e-55 | 52 |
| copR | AAC33719.1 | regulatory protein CopR | Not tested | SPI-5 | Protein | 7e-55 | 51 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| L483_26250 | YP_008096996.1 | transcriptional regulator | BAC0125 | Protein | 9e-66 | 60 |
| L483_26250 | YP_008096996.1 | transcriptional regulator | BAC0083 | Protein | 1e-61 | 59 |
| L483_26250 | YP_008096996.1 | transcriptional regulator | BAC0197 | Protein | 4e-64 | 59 |
| L483_26250 | YP_008096996.1 | transcriptional regulator | BAC0638 | Protein | 2e-55 | 59 |
| L483_26250 | YP_008096996.1 | transcriptional regulator | BAC0308 | Protein | 2e-57 | 55 |
| L483_26250 | YP_008096996.1 | transcriptional regulator | BAC0111 | Protein | 1e-61 | 55 |
| L483_26250 | YP_008096996.1 | transcriptional regulator | BAC0347 | Protein | 8e-58 | 51 |
| L483_26250 | YP_008096996.1 | transcriptional regulator | NC_003923.1003417.p0 | Protein | 1e-37 | 44 |
| L483_26250 | YP_008096996.1 | transcriptional regulator | NC_013450.8614146.p0 | Protein | 1e-37 | 44 |
| L483_26250 | YP_008096996.1 | transcriptional regulator | NC_002951.3238224.p0 | Protein | 1e-37 | 44 |
| L483_26250 | YP_008096996.1 | transcriptional regulator | NC_007793.3914065.p0 | Protein | 1e-37 | 44 |
| L483_26250 | YP_008096996.1 | transcriptional regulator | NC_002758.1121390.p0 | Protein | 1e-37 | 44 |
| L483_26250 | YP_008096996.1 | transcriptional regulator | NC_010079.5776364.p0 | Protein | 1e-37 | 44 |
| L483_26250 | YP_008096996.1 | transcriptional regulator | NC_002952.2859858.p0 | Protein | 1e-37 | 44 |
| L483_26250 | YP_008096996.1 | transcriptional regulator | NC_007622.3794948.p0 | Protein | 1e-37 | 44 |
| L483_26250 | YP_008096996.1 | transcriptional regulator | AE015929.1.gene1106. | Protein | 7e-33 | 42 |
| L483_26250 | YP_008096996.1 | transcriptional regulator | U82965.2.orf14.gene. | Protein | 2e-33 | 42 |
| L483_26250 | YP_008096996.1 | transcriptional regulator | AE000516.2.gene3505. | Protein | 9e-29 | 42 |
| L483_26250 | YP_008096996.1 | transcriptional regulator | CP001918.1.gene5135. | Protein | 4e-22 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| L483_26250 | YP_008096996.1 | transcriptional regulator | VFG0596 | Protein | 4e-56 | 52 |
| L483_26250 | YP_008096996.1 | transcriptional regulator | VFG1389 | Protein | 3e-36 | 44 |
| L483_26250 | YP_008096996.1 | transcriptional regulator | VFG1386 | Protein | 3e-38 | 43 |
| L483_26250 | YP_008096996.1 | transcriptional regulator | VFG1390 | Protein | 6e-38 | 42 |
| L483_26250 | YP_008096996.1 | transcriptional regulator | VFG0473 | Protein | 7e-31 | 41 |
