Gene Information

Name : L483_24060 (L483_24060)
Accession : YP_008096573.1
Strain : Pseudomonas putida H8234
Genome accession: NC_021491
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5092056 - 5092811 bp
Length : 756 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence : 
ATGAGCGGCCCGCTGCGTATGTTGTTGACTTTGGCGCTGCTGCTGGCTGCGCCGCTGGCCCTGGCCGCCGACCCGTTGTC
GATCCCGGCCATTACCCTGTCCAACGGGGCGGACGGGCAGCAGGAGTATTCGGTCAGCCTGCAGATTCTGCTGATCATGA
CGGCGCTCAGCTTCATCCCGGCGTTCGTCATCCTGATGACCAGTTTTACCCGCATCATCATCGTGTTCTCGATCCTGCGT
CAGGCCCTGGGCCTGCAGCAGACGCCGTCCAACCAGATCCTGACCGGCATGGCGCTGTTTCTGACCATGTTCATCATGGC
GCCGGTGTTCGACCGGGTGAACCAGGACGCCCTGCAGCCGTACCTCAAGGAGCAGATGACTGCCCAGCAGGCCATCGACA
AGGCCCAGGTGCCGCTCAAGGACTTCATGCTGGCGCAAACCCGGCAAAGCGACCTGGACTTGTTCATGCGCCTGTCCAAG
CGCACCGACATCGCCGGCCCCGATCAGGTCCCGCTGACGATTTTGGTGCCGGCATTCGTTACCTCCGAGCTGAAAACCGC
GTTTCAGATCGGCTTCATGATCTTCATCCCGTTCCTGATCATCGACATGGTCGTGGCCAGTGTGCTGATGGCCATGGGTA
TGATGATGTTGTCGCCGCTGATCATCTCGCTGCCGTTCAAGATCATGTTGTTCGTGCTGGTGGATGGCTGGGCGCTGATC
ATGGGCACCCTGGCCAGCAGTTTCGGCGGCGTCTGA

Protein sequence : 
MSGPLRMLLTLALLLAAPLALAADPLSIPAITLSNGADGQQEYSVSLQILLIMTALSFIPAFVILMTSFTRIIIVFSILR
QALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLKEQMTAQQAIDKAQVPLKDFMLAQTRQSDLDLFMRLSK
RTDIAGPDQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALI
MGTLASSFGGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 5e-30 42
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 5e-30 42
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 5e-30 42
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 2e-32 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 1e-32 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 1e-32 41
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 3e-32 41
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 3e-32 41
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 8e-33 41
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 1e-22 41
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 1e-22 41
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 8e-33 41
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 1e-32 41
escR AAK26700.1 EscR Virulence LEE Protein 8e-33 41
escR AAL57527.1 EscR Virulence LEE Protein 8e-33 41
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 1e-32 41
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 4e-32 41
escR CAC81847.1 EscR protein Virulence LEE II Protein 8e-33 41
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 1e-32 41
escR CAI43889.1 EscR protein Virulence LEE Protein 8e-33 41
escR AAC31528.1 L0049 Virulence LEE Protein 8e-33 41
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 1e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
L483_24060 YP_008096573.1 flagellar biosynthesis protein FliP VFG1259 Protein 1e-89 84
L483_24060 YP_008096573.1 flagellar biosynthesis protein FliP VFG2016 Protein 6e-67 62
L483_24060 YP_008096573.1 flagellar biosynthesis protein FliP VFG2338 Protein 1e-61 61
L483_24060 YP_008096573.1 flagellar biosynthesis protein FliP VFG2494 Protein 6e-65 61
L483_24060 YP_008096573.1 flagellar biosynthesis protein FliP VFG0519 Protein 5e-33 41
L483_24060 YP_008096573.1 flagellar biosynthesis protein FliP VFG0188 Protein 1e-34 41
L483_24060 YP_008096573.1 flagellar biosynthesis protein FliP VFG0394 Protein 9e-33 41
L483_24060 YP_008096573.1 flagellar biosynthesis protein FliP VFG0827 Protein 4e-33 41