Gene Information

Name : L483_23475 (L483_23475)
Accession : YP_008096457.1
Strain : Pseudomonas putida H8234
Genome accession: NC_021491
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4950895 - 4951578 bp
Length : 684 bp
Strand : -
Note : response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes; Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence : 
ATGCACGTTCTGCTCTGCGAGGACGACGACCTGATCGCCGCCGGCATCTGCGCCGGCCTCACCGCCCAGGGCCTGACCGT
GGACCGGGTGGGCAACGCCGCCGCTGCGCGGGCGATGTTGCAGGCCGCGCAGTTCGACGTGATGATCCTCGACCTCGGCC
TGCCCGACGAAGACGGCCTCAAGCTGCTGCGCCGCCTGCGCCAGCAGGGTGTGGACCTGCCAGTGCTGGTACTCACGGCC
CGCGATGCCGTCACCGACCGCGTCGATGGCCTGCAGGCCGGCGCCGATGACTACCTGCTCAAGCCGTTCGACCTGCGCGA
GCTGGCCGCTCGCCTGCATACCCTACTGCGGCGGGTGGCCGGGCGGGCGGTGAATGTGATCGAGCACGGGCCGTTGCGCT
ATGACCCGAGCAGCTGCGAGGCGACCCTGGCCGGCCAATCGGTCGACCTGTCCCGCCGTGAGCAGGCCTTGCTCCAGGCG
TTGCTGCAAAACCCCGGGCGGGTGCTGTCCAGTGAACAGCTTAAAGATTGCGTATACGGCTTCAGCGATGAAGTCGAAAG
CAACGCCCTGAACGTGCATATCCACCACCTGCGGCGCAAGCTGGGCAACGGCATTGTCGAGACCGTGCGTGGCCTGGGTT
ATCGGCTGGGCCCTGCGCAGGCCCCGGAGGAGGCCGCCTCATGA

Protein sequence : 
MHVLLCEDDDLIAAGICAGLTAQGLTVDRVGNAAAARAMLQAAQFDVMILDLGLPDEDGLKLLRRLRQQGVDLPVLVLTA
RDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVAGRAVNVIEHGPLRYDPSSCEATLAGQSVDLSRREQALLQA
LLQNPGRVLSSEQLKDCVYGFSDEVESNALNVHIHHLRRKLGNGIVETVRGLGYRLGPAQAPEEAAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 9e-51 56

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
L483_23475 YP_008096457.1 transcriptional regulator BAC0487 Protein 1e-29 43
L483_23475 YP_008096457.1 transcriptional regulator CP001918.1.gene2526. Protein 6e-24 41
L483_23475 YP_008096457.1 transcriptional regulator CP000647.1.gene1136. Protein 6e-24 41
L483_23475 YP_008096457.1 transcriptional regulator NC_002516.2.879194.p Protein 8e-26 41
L483_23475 YP_008096457.1 transcriptional regulator BAC0530 Protein 6e-24 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
L483_23475 YP_008096457.1 transcriptional regulator VFG1389 Protein 1e-22 44
L483_23475 YP_008096457.1 transcriptional regulator VFG0473 Protein 8e-34 43