|
Name : L483_22505 (L483_22505) Accession : YP_008096265.1 Strain : Pseudomonas putida H8234 Genome accession: NC_021491 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : - COG ID : - EC number : - Position : 4694515 - 4696476 bp Length : 1962 bp Strand : + Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+. DNA sequence : ATGCGCCTGTTCCTCTGCGAAAAACCCTCACAGGCAAAAGACATCGCCAAAGTGCTTGGCGCCACTCGCAAGGGCGACGG CTGCTGGCAAGGTACCGATGTCTGCGTAACCTGGTGCATCGGCCATCTGCTGGAAACCGCCCCGCCCGACAGCTACGACG AACGCTACAAGCGCTGGAACCTGGCCGACCTGCCGATCATCCCGGACACGTGGAAGATGCTGGTCAAGCCCAAAACCGCC AGCCAGTTCAAGGCGGTGAAGCGCCTGCTCGGCGAAGCCCGGGAGCTGATAATTGCCACCGATGCCGACCGCGAAGGCGA AATGATCGCCCGCGAGCTGGTCGAGCATTGCCGCTACCGCGGCCCGGTGCAGCGCCTTTGGCTCTCGGCGCTGGATGACA CCTCCATCCGCAAGGCCCTGGCGCGCCTGCTGCCAGGCCACGAAACGTTCAACCTGTACCACTCGGCGCTGGGCCGCTCC CGCGCCGACTGGCTCATCGGCATGAACATGAGCCGGCTGTTCACCCTGCTTGGCCGCCAATCCGGCTACCAGGGCGTGCT GCCGGTGGGGCGGGTGCAAACACCCACCTTGCGCCTGGTGGTCGACCGCGACCGCAGCATTGCCGACTTCGTGCCGGTGC CGTTCTGGGCCATCGACGTACAGCTTGAACACGCAGGCCAACGTTTCAACGCCCAATGGCGTGCACCCGAAGATGCCTGC GACGATCAGGGCCGCTGCCTGAACCAGGGTTTGGCGCAACAGGCTGCCACCGCCATCGGTAATGCCGGTACGGCCCGGGC CGTCAAGGTGACCACCGAGCGCATGCGTGAAGCCGCGCCCCTGCCCTTCGACCTCGGCACCCTGCAGGAGCTGTGCTCGA AAAAGTTCGGCCTGGGCGCCCAGGAAACCCTCGACATCGCTCAGGCCCTGTACGAGACCCACAAGCTGATCACCTACCCG CGCAGCGATTGCGGCTACCTGCCACAAAGCCAGCACGCCGAGGCCCCCGCCATCCTGGCTGCCCTGCAACGGGCCGATGC CAGCCTGGCGCCGCTACAGCCCTACCTGGAGCCCCAACGCCGCTCGCGGGCATGGAACGACGCCAAGGTCAGCGCCCACC ACGGCATCATCCCCACCGCCGCCGCCAGCGACCCCTCACGCCTGCCGGCCAAGCACAAGGCGGTGTACACGCTTATCCGC GCCCGCTACCTGGCGCAGTTCCTGCCCAATCATGAGTACGACCGCACCCAGGCCGACTTCGACTGTGCCGGCCATGCCTT GCGCGCAGTGGGCAAGCAGATCGTCGAACCGGGTTGGCGCCGCGCCCTGCCCGAGGCGCTGACCCCGGCAAAAGGCCGCG AAGCACCGCCGGCCCAGGTGCTGCCCGTGCTGCGCGAAGGCCAGGACTGCACCGTGCAAGGCCTGCAACTGAAAGACCTG TGGACCCAGCCGCCCAAGCCGTTCACTGAAGGCGACCTGATCAAGGCCATGAAAAACGTGGCCAAGCTGGTGGACGACCC GCGCCTTAAGCAGAAGCTCAAGGAAACCACCGGCATCGGCACCGAGGCCACCCGCGCCAGCATCATCCAGGGCTTGCTCG ACCGCGGCTACCTGGTGAAGAACGGCAAGGCGCTCGCGGCCACACCCGCGGCCTTCAGCCTGATCGATGCCGTACCCCGC GCCATCGCCGACCCTGGCACCACGGCGATCTGGGAGCAGGCGCTGGACATGGTGCAAAGCGGCGAGATGAGCCTGGAAGA ATTCGTGGCCCGGCAGTCGGCGTGGATGGGCAAACTGGTGGAACGTTGCAGCGGCATGCGCATGACCATCAGCGGGCCGG CAGCCGGGGCAGCACCGCCCTGGAAGAAGAAGCGTCGCGGTGGCAGTGGAAAAAGCAAAGCGGCCGGAAGCAAGTCGGCA GCGGGCAAGCCGCGCCAGCCCCGGAAAAAAGCGACAACCTGA Protein sequence : MRLFLCEKPSQAKDIAKVLGATRKGDGCWQGTDVCVTWCIGHLLETAPPDSYDERYKRWNLADLPIIPDTWKMLVKPKTA SQFKAVKRLLGEARELIIATDADREGEMIARELVEHCRYRGPVQRLWLSALDDTSIRKALARLLPGHETFNLYHSALGRS RADWLIGMNMSRLFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVPFWAIDVQLEHAGQRFNAQWRAPEDAC DDQGRCLNQGLAQQAATAIGNAGTARAVKVTTERMREAAPLPFDLGTLQELCSKKFGLGAQETLDIAQALYETHKLITYP RSDCGYLPQSQHAEAPAILAALQRADASLAPLQPYLEPQRRSRAWNDAKVSAHHGIIPTAAASDPSRLPAKHKAVYTLIR ARYLAQFLPNHEYDRTQADFDCAGHALRAVGKQIVEPGWRRALPEALTPAKGREAPPAQVLPVLREGQDCTVQGLQLKDL WTQPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKETTGIGTEATRASIIQGLLDRGYLVKNGKALAATPAAFSLIDAVPR AIADPGTTAIWEQALDMVQSGEMSLEEFVARQSAWMGKLVERCSGMRMTISGPAAGAAPPWKKKRRGGSGKSKAAGSKSA AGKPRQPRKKATT |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 0.0 | 64 |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 0.0 | 63 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 0.0 | 63 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 7e-151 | 51 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 6e-152 | 50 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 6e-152 | 50 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 5e-152 | 50 |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 1e-149 | 50 |
| topB | AAW83109.1 | TopB | Not tested | GGI | Protein | 4e-119 | 43 |
