Gene Information

Name : L483_20930 (L483_20930)
Accession : YP_008095961.1
Strain : Pseudomonas putida H8234
Genome accession: NC_021491
Putative virulence/resistance : Virulence
Product : DNA repair protein RadC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4405676 - 4406185 bp
Length : 510 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence : 
ATGTCGCAACTGTCCTTTCCCTCGTTCGATTCCTGTCTGCTGGTGCGCGACGCGCACGGGCGCTATCTACCGGCATCGGC
CGACGACATTCTGGAAGCTGCGCGCCAGGTCATTGACCGGAAAATGCAGCGCGGAGCAGAGTTCACTTCGCCGGCGGCGG
TCAAGGAATACTTGCGTACAAAGTTGGCCAGCTTCGAGCATGAGGTGTTCGTAGTGCTGTTCATGGATACGCGCCATCGT
CTGATCGAATACAGGGAGATGTTCCACGGCACTATTGACGGTGCGTCGGTGTATCCGCGCGAAGTGGTCAAGGAGGCGCT
GCGGCTCAATGCGGCGGCGGTCGTCGTTTCGCACAACCATCCGAGCGGAAACCCCGAGCCGAGCGCGGCTGACCGGGCGC
TGACCCAGCGGCTCAAGGAAGCGTTGGGTCTGGTGGACGTGCGCGTGCTCGATCACATCATCGTTGCGGGCAACGAAACG
GCATCGTTCGCCGAGCATGGGCTGATCTAG

Protein sequence : 
MSQLSFPSFDSCLLVRDAHGRYLPASADDILEAARQVIDRKMQRGAEFTSPAAVKEYLRTKLASFEHEVFVVLFMDTRHR
LIEYREMFHGTIDGASVYPREVVKEALRLNAAAVVVSHNHPSGNPEPSAADRALTQRLKEALGLVDVRVLDHIIVAGNET
ASFAEHGLI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-40 58
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-40 58
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-41 57
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 7e-38 54
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 1e-25 53
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 2e-26 53
unnamed AAL08475.1 unknown Not tested SRL Protein 8e-27 53
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 3e-26 52
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 3e-26 52
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 2e-26 52
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 2e-26 52
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 2e-26 52
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 9e-26 51
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 8e-26 51
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 1e-25 51
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 1e-25 51
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 2e-26 50
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 1e-25 50
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 9e-27 48
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 7e-27 48
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 9e-27 48
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 2e-26 48
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 3e-33 47
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 8e-26 47
radC AAN62275.1 putative DNA repair protein RadC Not tested PAGI-3(SG) Protein 4e-25 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
L483_20930 YP_008095961.1 DNA repair protein RadC VFG1119 Protein 5e-41 58
L483_20930 YP_008095961.1 DNA repair protein RadC VFG1066 Protein 3e-27 53
L483_20930 YP_008095961.1 DNA repair protein RadC VFG1528 Protein 1e-26 52
L483_20930 YP_008095961.1 DNA repair protein RadC VFG0660 Protein 3e-26 51
L483_20930 YP_008095961.1 DNA repair protein RadC VFG1617 Protein 7e-27 50
L483_20930 YP_008095961.1 DNA repair protein RadC VFG1678 Protein 8e-27 48