|
Name : L483_19130 (L483_19130) Accession : YP_008095603.1 Strain : Pseudomonas putida H8234 Genome accession: NC_021491 Putative virulence/resistance : Virulence Product : carnitine dehydratase Function : - COG functional category : - COG ID : - EC number : - Position : 4050998 - 4052479 bp Length : 1482 bp Strand : + Note : Derived by automated computational analysis using gene prediction method: Protein Homology. DNA sequence : ATGACCCTCGTTCGTTTCCAGATGTGCATCGACGGCCAATGGCGCGATGCCCAGAGCGGCAAGACCTTCGACAGCCTCAA CCCGGCCACCGCCCAAGCCTGGGCGCAGCTTCCCGACGCTGACGAAACCGACGTCGAGCTGGCCGTGCAGGCCGCCCAGC GTGCCTTCGACAGCAAGGAATGGCGCAGCATCACCGCCACCGCGCGTGGCAAGCTGCTGCGTCGCCTGGGTGACCTGATT AGCGAGAACAAGGAACACCTGGCCCAGCTGGAAAGCCGTGACAACGGCAAGCTGATCCGCGAAACCCGCGGCCAGGTCGG CTATCTGCCAGAGTTCTTCCACTACACCGCAGGGCTGGCCGACAAGCTTGAAGGCGGCACCCTGCCGCTGGACAAGCCCG ACCTGTTCGCCTACACCGTGCACGAGCCCATCGGCGTGGTTGCCGGGATCATCCCGTGGAACAGCCCGCTGTACCTCACC GCGATCAAGCTGGCCCCAGCCCTGGCTGCCGGCAACACCATCGTGCTCAAACCGTCCGAACATGCCTCGGCGACCATCCT CGAGCTGGCCCGTCTGGCCCTCGAAGCCGGCTTCCCGGCCGGTGTGGTCAACGTGGTCACCGGCTACGGCCCGACCACCG GCGCGGCACTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACCGGCGGCGCCGCTACAGCCCGCCATGTGGTGCGC AGCAGTGCCGAGAACTTTGCCAAGCTGTCGCTGGAGCTGGGCGGCAAGTCGCCGAACATCATCTTCGCCGACGCCGACCT GGACAGCGCCATCAACGGTGCCGTGGCCGGCATCTATGCCGCCTCCGGGCAAAGCTGCGTAGCCGGTTCGCGCCTGCTGG TGCAGGACGAGATTTTCGACGAATTCGTAGAGCGCCTGATTACCCGCGCCAAGCGCATCCGCATCGGTAACCCGCAGGAC GACGCCAGCGAAATGGGCCCTATGGCCACCGCGCAGCAGTTGGCCGTCGTCGAAGGCCTGGTGGCTGCGGCCAAGGCTGA AGGTGCCAAGCTGCACATGGGCGGCAAGCGTGCCGAGGTCGAGGGTGACGGCTGGTTCTACGAGCCGACCCTGTTCGAGT GCGACAGCAACTCGATGACCATCATGCAGGAAGAAGTGTTCGGCCCTGTCGCCGCGGTCATCCGCTTCAAGACCGAGGAG GAGGCCCTGGAAATCGCCAACGACTCGCAGTTCGGCCTGGCCGCCGGCATCTGGACCCGTGACCTGGGCCGTGCTCATCG CCTGGCCCGCGACGTGCGTTCGGGGATCATCTGGGTCAACACCTACCGCGCCGTGTCGGCCATGGCGCCAATTGGTGGTT TCAAGAACAGCGGCTACGGCCGTGAGAGCGGCATCGATTCGGTGCTGGCCTATACCGAGCTGAAGACCGTGTGGATCAAC CTGTCCACCGCGCCGATGCCCGACCCGTTCGTGATGCGCTAG Protein sequence : MTLVRFQMCIDGQWRDAQSGKTFDSLNPATAQAWAQLPDADETDVELAVQAAQRAFDSKEWRSITATARGKLLRRLGDLI SENKEHLAQLESRDNGKLIRETRGQVGYLPEFFHYTAGLADKLEGGTLPLDKPDLFAYTVHEPIGVVAGIIPWNSPLYLT AIKLAPALAAGNTIVLKPSEHASATILELARLALEAGFPAGVVNVVTGYGPTTGAALTRHPLVRKIAFTGGAATARHVVR SSAENFAKLSLELGGKSPNIIFADADLDSAINGAVAGIYAASGQSCVAGSRLLVQDEIFDEFVERLITRAKRIRIGNPQD DASEMGPMATAQQLAVVEGLVAAAKAEGAKLHMGGKRAEVEGDGWFYEPTLFECDSNSMTIMQEEVFGPVAAVIRFKTEE EALEIANDSQFGLAAGIWTRDLGRAHRLARDVRSGIIWVNTYRAVSAMAPIGGFKNSGYGRESGIDSVLAYTELKTVWIN LSTAPMPDPFVMR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| VC0819 | NP_230467.2 | aldehyde dehydrogenase | Not tested | VPI-1 | Protein | 4e-80 | 41 |
| aldA | AAK20747.1 | aldehyde dehydrogenase | Virulence | VPI | Protein | 3e-83 | 41 |
| aldA | AAK20776.1 | aldehyde dehydrogenase | Virulence | VPI | Protein | 3e-83 | 41 |
| aldA | AAC12273.1 | aldehyde dehydrogenase | Virulence | VPI | Protein | 3e-83 | 41 |
| orf17 | AAO17183.1 | Orf17 | Not tested | tcd island | Protein | 2e-75 | 41 |
| ORF SG19 | AAN62241.1 | putative aldehyde dehydrogenase | Not tested | PAGI-3(SG) | Protein | 2e-78 | 41 |
| aldA-1 | YP_001216300.1 | aldehyde dehydrogenase | Not tested | VPI-1 | Protein | 4e-83 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| L483_19130 | YP_008095603.1 | carnitine dehydratase | VFG0082 | Protein | 2e-80 | 41 |
