Gene Information

Name : tpx (L483_18800)
Accession : YP_008095537.1
Strain : Pseudomonas putida H8234
Genome accession: NC_021491
Putative virulence/resistance : Virulence
Product : lipid hydroperoxide peroxidase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3979884 - 3980384 bp
Length : 501 bp
Strand : -
Note : antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; Derived by automated computational analysis using gene prediction method: Protein Homolog

DNA sequence : 
ATGGCTCAAGTGACTCTCAAAGGCGGCCCGGTTCAAGTCAACGGCGAACTGCCGAAAATCGGCGCCCAGGCTCCGGCATT
CTCCCTGGTCGGTGAAGGCCTGGCTGACAAGTCGCTGAAGGACTACGCCGGCAAGCGCAAAGTGCTGAACATCTTCCCGA
GCGTCGACACCCCAACCTGCGCCACCTCCGTGCGCAAGTTCAACGCTCAGGCCAATGATGTGGCCAACACCGTGGTGCTG
TGCATCTCCGCCGACCTGCCGTTCGCCCAGGCGCGTTTCTGCGGTGCCGAAGGCCTGGAAAATGTTAAGAACCTGTCGAC
CCTGCGTGGCCGCGAGTTCCTCGAGAACTACGGCGTCGCCATTGCCGACGGCCCGCTGGCCGGCCTGGCTGCCCGCGCCG
TGGTGGTGCTGGATGAAAACGACAACGTGCTGCACAGCGAACTGGTTGGCGAAATCGCTGACGAGCCGAACTACGATGCA
GCGCTGGCAGTACTGAAGTAA

Protein sequence : 
MAQVTLKGGPVQVNGELPKIGAQAPAFSLVGEGLADKSLKDYAGKRKVLNIFPSVDTPTCATSVRKFNAQANDVANTVVL
CISADLPFAQARFCGAEGLENVKNLSTLRGREFLENYGVAIADGPLAGLAARAVVVLDENDNVLHSELVGEIADEPNYDA
ALAVLK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tpx NP_230472.1 thiol peroxidase Virulence VPI-1 Protein 2e-30 48
tagD AAK20781.1 toxR-activated gene D protein Virulence VPI Protein 1e-30 48
tpx YP_001216305.1 thiol peroxidase Not tested VPI-1 Protein 2e-30 47
tagD AAK20751.1 toxR-activated gene D protein Virulence VPI Protein 1e-30 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tpx YP_008095537.1 lipid hydroperoxide peroxidase VFG0087 Protein 6e-31 48