|
Name : L483_18255 (L483_18255) Accession : YP_008095429.1 Strain : Pseudomonas putida H8234 Genome accession: NC_021491 Putative virulence/resistance : Virulence Product : general secretion pathway protein E Function : - COG functional category : - COG ID : - EC number : - Position : 3848132 - 3849805 bp Length : 1674 bp Strand : - Note : Derived by automated computational analysis using gene prediction method: Protein Homology. DNA sequence : ATGCCAGAAGCATTCGATGCAACAGTCTCAGCCTACCCCCGCGACCTGCTGGCCCAGGCCCGCCTGCAAGCCAGCGACGA GCGCTTGCTCAGCTGCCTCGAGCGCCTTGCCTGCGACACCCCCGACACCTTCATCCAGCGCCTGGGCCTGACCCTGCACT ACCCGGTACTGGCCAGCCACACCCTGCTGGCCAGCAGCCCGCGCTTTGACAAGGTCAGCCTCGCCGCGTGCCTGAAGCGC GAATTCGTGCTGATCGAGCAGGGCGGCCAGCTGTTGGGCGTTTTCGCCGACCCCTTCGACCCCGCCCGCCTGGCCTGGAT CGACGATGTGCTGCAAGGCGCGCCGTTGTACCTGGCGCACCCCGCCGAACTGGCCACGTTCCTGGCCCGCCATGAAGAAA GCTTCCACGCCGTGGATGCCCTTGACCATGACGCCGAGGCCAGCAGCGAAGGCGACCCGCTGCAGCGCCTGTCGCTGGCC AGCATCAGCGAAGACCAGAGCCGCGTGGTCAAGCTGGTCAACGCCACCCTGTACGACGCCCTCAAGCTGCACGCCAGCGA CATCCACCTGGGCATGACCGGCCAGGGCCTGACCATCAAGTACCGCATCGACGGTGTGCTAAACGGCGCTGGCAAAGCCA GTGGCAGTGCCTTTGCCGACCAGGTCATCTCGCGCATCAAGGTCATGGCCGAACTGGACATCGGCGAAAAACGCGTGCCC CAGGACGGCCGCTTCAAGGTTGCCGTGGGCGACCGGCAGATCGACTTCCGTGTATCGATCATGCCTAGCATCTTTGGTGA AGATGCCGTACTGCGGGTGCTCGACAAGCAGGACTTGTCCGACCGGGTCAGTGGCGTGCAGTTGCAAGCCCTGGGCTTTG CCGACGAAACCCTGCGCGCCCTGCGCCGGCTGGCCGCTGAACCTTACGGCATGATCCTGGTGACCGGCCCCACCGGCAGC GGCAAGACCACCACCCTGTACGCCATGATCAGCGAGATCAACCATGGCGTAGACAAGATCATCACCATCGAAGACCCGGT CGAGTACCAGCTGCCCGGCGTGTTGCAGATCCCGGTCAACGAGAAGAAGGGCCTGACCTTCGCCCGCGGCCTGCGCTCGA TCTTGCGTCACGACCCGGACAAGATCCTGGTCGGTGAGATCCGCGACCCGGACACCGCGCAAATTGCTGTGCAGTCGGCG CTGACCGGCCACCTGGTGTTCACCACCATCCACGCCAACAACGTGTTCGACGTGATTGGCCGCTTCAGCCAGATGCAGGT CGACCCCTACAGCTTCGTCTCCGCATTGAACGCAGTGTTGGCCCAGCGCCTGATCCGCCTGGCTTGCCCGCATTGCTCCA GCCCCTGCGAAGTGGATGACGACACCCTGTATGGCTCGGGCCTGAGCCGTGAAGGCGTGGCCGGCTGGAGGTTCGTTCGC GTGCAGGGTTGCGGCCAGTGCCGTGGCAGTGGCTTTCGCGGCCGCAGCGCGATCGCGGAGCTGCTGCACCTGGATGACGA CCTGCGGCAAATGATTGTCGAGCGCCGCCCCCTGTCGCAAATCAAGACACTCGCCTGCCAGCGCGGCCTGCGCCTGCTGC GGGCCTCGGCCCTGGACCTGGTCCGCGACGGCCGCACCACCCTTGAGGAGATCAACCGTGTCACATTCATCTGA Protein sequence : MPEAFDATVSAYPRDLLAQARLQASDERLLSCLERLACDTPDTFIQRLGLTLHYPVLASHTLLASSPRFDKVSLAACLKR EFVLIEQGGQLLGVFADPFDPARLAWIDDVLQGAPLYLAHPAELATFLARHEESFHAVDALDHDAEASSEGDPLQRLSLA SISEDQSRVVKLVNATLYDALKLHASDIHLGMTGQGLTIKYRIDGVLNGAGKASGSAFADQVISRIKVMAELDIGEKRVP QDGRFKVAVGDRQIDFRVSIMPSIFGEDAVLRVLDKQDLSDRVSGVQLQALGFADETLRALRRLAAEPYGMILVTGPTGS GKTTTLYAMISEINHGVDKIITIEDPVEYQLPGVLQIPVNEKKGLTFARGLRSILRHDPDKILVGEIRDPDTAQIAVQSA LTGHLVFTTIHANNVFDVIGRFSQMQVDPYSFVSALNAVLAQRLIRLACPHCSSPCEVDDDTLYGSGLSREGVAGWRFVR VQGCGQCRGSGFRGRSAIAELLHLDDDLRQMIVERRPLSQIKTLACQRGLRLLRASALDLVRDGRTTLEEINRVTFI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 1e-74 | 46 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-74 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| L483_18255 | YP_008095429.1 | general secretion pathway protein E | VFG2048 | Protein | 3e-76 | 45 |
| L483_18255 | YP_008095429.1 | general secretion pathway protein E | VFG0182 | Protein | 3e-74 | 45 |
| L483_18255 | YP_008095429.1 | general secretion pathway protein E | VFG2426 | Protein | 6e-70 | 41 |
| L483_18255 | YP_008095429.1 | general secretion pathway protein E | VFG1880 | Protein | 7e-65 | 41 |
