Gene Information

Name : L483_16290 (L483_16290)
Accession : YP_008095038.1
Strain : Pseudomonas putida H8234
Genome accession: NC_021491
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3434544 - 3435221 bp
Length : 678 bp
Strand : -
Note : induced by CusR in the presence of copper; YedW induces the expression of the upstream gene yedV (encoding a sensor kinase) as well as yedW; yedVW is one of four copper regulons found in E. coli; part of the copper homeostasis mechanism; confers resistanc

DNA sequence : 
ATGAAACTACTGGTAGCTGAAGATGAACCCAAAACCGGTGCATACCTGCAGCAAGGCCTGAGTGAAGCGGGCTTCAATGT
CGATCGGGTTATGACCGGTACAGATGCTCTACAGCACGCGCTGAGTGAGTCCTATGACCTCCTGATCCTGGATGTGATGA
TGCCTGGGCTGGACGGGTGGGAAGTGCTGCGCATGGTGCGCGCCGCAGGAAAAGACGTTCCCGTATTGTTCTTGACGGCA
CGCGATGGTGTGGAGGACCGCGTTAAAGGGTTGGAGCTAGGTGCGGACGACTACCTAATCAAGCCATTTGCTTTTTCAGA
ACTTCTGGCCAGGGTCAGAACGCTGCTGCGTAGAGGCAATGGCTCACCCACGCAAACAACGATGAAAATTGCCGATCTGG
AAGTCGATCTGATGAAGCGGCGTGCGATCCGTGGCGGGAAAAGAATTGACCTGACCGCGAAGGAGTTTTCACTGCTGGAA
CTGCTACTGCGCCGGCGCGGCGAGGTGCTCCCGAAGTCGCTGATTGCCTCTCAGGTTTGGGACATGAATTTCGACAGCGA
CACCAATGTCATTGAGGTTGCGGTACGCCGGCTACGCGCAAAAATCGATGACGATTTCGATCTCAAGCTGATTCATACCG
CCCGCGGCATGGGATACATGATGGATGCGCCGGAGTGA

Protein sequence : 
MKLLVAEDEPKTGAYLQQGLSEAGFNVDRVMTGTDALQHALSESYDLLILDVMMPGLDGWEVLRMVRAAGKDVPVLFLTA
RDGVEDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGNGSPTQTTMKIADLEVDLMKRRAIRGGKRIDLTAKEFSLLE
LLLRRRGEVLPKSLIASQVWDMNFDSDTNVIEVAVRRLRAKIDDDFDLKLIHTARGMGYMMDAPE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-54 57
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-53 56

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
L483_16290 YP_008095038.1 transcriptional regulator BAC0638 Protein 4e-85 87
L483_16290 YP_008095038.1 transcriptional regulator BAC0083 Protein 4e-84 81
L483_16290 YP_008095038.1 transcriptional regulator BAC0308 Protein 2e-63 63
L483_16290 YP_008095038.1 transcriptional regulator BAC0197 Protein 2e-63 63
L483_16290 YP_008095038.1 transcriptional regulator BAC0111 Protein 6e-68 62
L483_16290 YP_008095038.1 transcriptional regulator BAC0347 Protein 8e-63 60
L483_16290 YP_008095038.1 transcriptional regulator BAC0125 Protein 6e-62 60
L483_16290 YP_008095038.1 transcriptional regulator NC_002516.2.879194.p Protein 7e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
L483_16290 YP_008095038.1 transcriptional regulator VFG0596 Protein 6e-55 57
L483_16290 YP_008095038.1 transcriptional regulator VFG1390 Protein 1e-39 46
L483_16290 YP_008095038.1 transcriptional regulator VFG1386 Protein 5e-37 43
L483_16290 YP_008095038.1 transcriptional regulator VFG1389 Protein 1e-35 43