Gene Information

Name : L483_15740 (L483_15740)
Accession : YP_008094928.1
Strain : Pseudomonas putida H8234
Genome accession: NC_021491
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3341609 - 3342298 bp
Length : 690 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence : 
ATGAGACTTCTGGTTGCGGAAGACGAACCCAAAATAGGTATCTATTTGCAGCAAGGACTCACTGAGGCGGGGTTCAATGT
TGATCGCTTTACCAATGGCCAGGACGCGCTTCAGCACGCTTTGAGCGAGGCGTATGGCCTGCTGATTCTTGATGTGATGA
TGCCTGGGCTGGATGGCTGGGAAGTACTTCAGAAAGTGCGTGCATCCGGGAAAGATGTTCCGGTGCTCTTCCTCACGGCG
CGAGACCGCGTTGAGGACCGAGTAAAAGGGCTTGAACTGGGGGCCGACGATTATCTGATTAAACCCTTTGCCTTTCCTGA
GCTGCTGGCACGCGTTCGAACGTTGTTGCGTCGCGGCACTAGTGCGCCCTCACAAACCTATATGAAATTGGCTGATCTGG
AGGTGGACCTACTTAAGCGTAGGGTTATTCGAGGAGGCAAGCGCATAGATCTGACAGCGAAAGAGTTTGCGTTGCTCGAA
CTGCTGCTTCGTCGTCGAGGTGAGGTTCTGCCCAAGTCACTTATTGCATCCCAAGTTTGGGACATGAACTTCGACAGTGA
TACCAACGTTATTGAGGTCGCGGTCAGAAGGCTCAGAGCAAAGATTGATGATGATTTTGAGTTCAAGCTGATCCACACCT
CTCGGGGAATGGGTTACATGTTGGACGCACCGGACTCGGGGTCGGAATGA

Protein sequence : 
MRLLVAEDEPKIGIYLQQGLTEAGFNVDRFTNGQDALQHALSEAYGLLILDVMMPGLDGWEVLQKVRASGKDVPVLFLTA
RDRVEDRVKGLELGADDYLIKPFAFPELLARVRTLLRRGTSAPSQTYMKLADLEVDLLKRRVIRGGKRIDLTAKEFALLE
LLLRRRGEVLPKSLIASQVWDMNFDSDTNVIEVAVRRLRAKIDDDFEFKLIHTSRGMGYMLDAPDSGSE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 5e-53 57
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 7e-52 55

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
L483_15740 YP_008094928.1 transcriptional regulator BAC0638 Protein 4e-92 96
L483_15740 YP_008094928.1 transcriptional regulator BAC0083 Protein 5e-81 79
L483_15740 YP_008094928.1 transcriptional regulator BAC0308 Protein 2e-64 64
L483_15740 YP_008094928.1 transcriptional regulator BAC0111 Protein 8e-65 62
L483_15740 YP_008094928.1 transcriptional regulator BAC0125 Protein 1e-60 61
L483_15740 YP_008094928.1 transcriptional regulator BAC0197 Protein 1e-62 61
L483_15740 YP_008094928.1 transcriptional regulator BAC0347 Protein 2e-59 58

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
L483_15740 YP_008094928.1 transcriptional regulator VFG0596 Protein 2e-53 57
L483_15740 YP_008094928.1 transcriptional regulator VFG1390 Protein 2e-38 48
L483_15740 YP_008094928.1 transcriptional regulator VFG1386 Protein 7e-36 45
L483_15740 YP_008094928.1 transcriptional regulator VFG1389 Protein 1e-33 43