Gene Information

Name : L483_12720 (L483_12720)
Accession : YP_008094329.1
Strain : Pseudomonas putida H8234
Genome accession: NC_021491
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2730268 - 2730948 bp
Length : 681 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence : 
ATGCCTCGCGTACTGACCATCGAAGACGACGCCGTCACCGGCCAGGAAATCGTCGCCGAACTTACCAGCCACGGCCTGGA
GGTGGAGTGGGCCGACAATGGCCGTGAAGGCCTGGCCAAAGCCATTGCCGGGGGCTACGACCTGATCACCCTGGACCGCA
TGCTCCCCGAGGTCGATGGCCTGACCATCGTCACCACCCTGCGCAGCCTCAAGATCGCCACGCCGATCCTGATGATCAGC
GCCCTGTCGGACGTCGACGAACGCGTACGCGGCCTGCGTGCAGGCGGTGACGACTACCTGACCAAGCCGTTTGCCTCCGA
CGAGATGGCCGCACGTGTCGAGGTATTGCTGCGCCGTAACAGCGTGCCCATGACCCAGACCCGCCTGCAGGTTGCGGACC
TGCAACTGGACCTGATCAGCCACGAGGCGCGCCGCGGCGACAATACGCTCAACCTGCTGCCCACCGAATACAAACTGCTG
GAATACCTGATGCGCCACAGCGGCCAGGTGATCACGCGGATGATGATTTTCGAAGAAGTCTGGGGCTACCACTTCGATCC
CGGCACCAACCTGATCGACGTGCACATCGGCCGCCTGCGCAAGAAAATCGACGCCCCCGGCCAGTCGCCGCTGATCCGTA
CGGTACGGGGCTCCGGCTATGCCATTGCTGAACCCGTCTAA

Protein sequence : 
MPRVLTIEDDAVTGQEIVAELTSHGLEVEWADNGREGLAKAIAGGYDLITLDRMLPEVDGLTIVTTLRSLKIATPILMIS
ALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRNSVPMTQTRLQVADLQLDLISHEARRGDNTLNLLPTEYKLL
EYLMRHSGQVITRMMIFEEVWGYHFDPGTNLIDVHIGRLRKKIDAPGQSPLIRTVRGSGYAIAEPV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
L483_12720 YP_008094329.1 transcriptional regulator BAC0111 Protein 2e-46 46
L483_12720 YP_008094329.1 transcriptional regulator BAC0347 Protein 8e-42 45
L483_12720 YP_008094329.1 transcriptional regulator BAC0125 Protein 1e-40 44
L483_12720 YP_008094329.1 transcriptional regulator BAC0197 Protein 4e-38 43
L483_12720 YP_008094329.1 transcriptional regulator BAC0083 Protein 6e-41 42
L483_12720 YP_008094329.1 transcriptional regulator BAC0308 Protein 7e-39 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
L483_12720 YP_008094329.1 transcriptional regulator VFG1389 Protein 2e-32 42