|
Name : L483_11955 (L483_11955) Accession : YP_008094177.1 Strain : Pseudomonas putida H8234 Genome accession: NC_021491 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : - COG ID : - EC number : - Position : 2571331 - 2573298 bp Length : 1968 bp Strand : - Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+. DNA sequence : ATGCGCCTGTTCATCTGCGAAAAACCATCCCAAGCCCGCGACATCGCCCGGGTGCTGCAGGCCAGCCGCCGCGCCGATGG CTACCTGAAGGGGCCGAATCTCATCGTTACCTGGTGCGTTGGCCATCTGCTGGAAACCGCACCGCCCGAAGCCTATGGCG ACTACAAGCGCTGGTCGCTGGACGATCTGCCAATCATTCCCAGCCGCTGGCAACTGGTAGCCAAGCCCAAGGTCGCCAGT CAGCTCAAGGTGATCAACCAACTGCTACGCACCTGCAGCGAGGTGGTGATCGCCACCGATGCCGACCGCGAAGGCGAGAT GATCGCCCGGGAGATTCTCGAGCGCTGCCAGTACCAGGGGCCGATTTTGCGCCTGTGGCTCTCCGCGCTGGACGAGGCGT CAATCCGCCGTGCCTTGGGCGCCTTGCGTCCAGGGGAACAGACCTTGCCGCTGTACCATTGTGCCCTCGCCCGCTCCCGA GCCGACTGGCTGGTCGGCATCAACCTGAGCCGGCTGTTCACGTTGCTCGGCCGCCGGGCCGGGTTCGACGGCCTGCTGCC GGTGGGACGCGTACAGACGCCCACCCTGCGCCTGGTGGTCGAGCGCGACCGGGCGATCGCGAGCTTTGTGCCGCAACCGT TCTGGACCCTCGATGCGCACCTGGAGCAGGACGGGATCCGCTTTCACGCGCGCTGGCAACCCACAGCCGCGGCCAGCGAT GCGGTTGGACGCTGTATCGACGAAACCGCCGCGCAGCAGGCGCTCAGGCGCCTCACACAAGCCGGCAGCGCGCAGATCTA CAGTTTCGAAGTTGAACGCGTGCGTGAAGGCCCGCCGCTGCCGTTCGACCTGGGCATGCTGCAGGAGATCTGCTCGGCCA AGCTCGGGCTCGGTGCACAGGAAGCCCTAGCCACCGCCCAGGCCCTGTATGAAAACCACAAGGCAACGACCTACCCGCGT ACCGACTGCGGCTATCTACCGGAGAGCATGCTCGATGAGGCGCCTCGCGTCCTCCACGCCCTGGCCGCCGCCGCGCCATC GCTGGGGGGAATCCTCAAGGAAGTCGACCCCAGCCGCCGCTCCCGCGCCTGGAACAGCAGCAAGATCACCGCGCACCACG GCATCATTCCTACTGCTGTAACCCTGGATTTGGCGCAGCTCTCCGAGCGCGAGCGGGCGGTTTACACGCTGATTCGCGCA CGCTACCTCGCGCAGTTCATGCCCGAGCACGAGTACCTCAAAACCCAGGCGCTGCTGCAGAGTCAGGCAGACCAACTGAT TGCGCGCGGCAAACAGATCCTGGTTCGCGGCTGGAAGGCGGTGGTCAACGAGGCCGATGGAAATGAGCCGGCCGAGCAAG CGCAGCGCCTGCCGACGCTACGTGAATCCGCGACGGTGGCGCTGATCGACGCCACGCTCAACGCACAGAGTACGCAGCCC CCAAAGGCCTACACCGAAGGCACCCTGGTCAAAGCGATGAAAACCATCGCCAACCTGGTGGCCGATCCGCGGCTCAAGCA GAAGCTTAAGGACAGCTGCGGCCTCGGTACCGAGGCCACCCGCGCAGCGATCATCCAGGGCCTGATCGATCACGGTTATC TGATCAAGAAGAAACGCAGCCTGGCTGCCTCAGCGGCGGCGCATACCCTGATCGAAGCGGTGCCACCTGAGGTGGCCGAC CCGGTCATGACCGCGCTGTGGGAGCAGGCGCTGGACCGCATCGAGTCGGGCCAACTGAGCGTCGAGACCTTTCTCGCCAA ACAGGCAGAATGGCTGACTCGACTGGTGCGCAGTAACGCCACGCTCACCCTCCGCCCGCCCCCCAGTAAAGGGCCCTTCT GCCCGGTGTGCTGCAGTTCCATGCGCCAGCGCAAAGGTCGCACCGGCAGCTTCTGGTCGTGCACCCGCTACCCCGAGTGC AAGGGCACCAAACCGGTGGCGAAAGCCAAGCGGGCGAAAAACGCATGA Protein sequence : MRLFICEKPSQARDIARVLQASRRADGYLKGPNLIVTWCVGHLLETAPPEAYGDYKRWSLDDLPIIPSRWQLVAKPKVAS QLKVINQLLRTCSEVVIATDADREGEMIAREILERCQYQGPILRLWLSALDEASIRRALGALRPGEQTLPLYHCALARSR ADWLVGINLSRLFTLLGRRAGFDGLLPVGRVQTPTLRLVVERDRAIASFVPQPFWTLDAHLEQDGIRFHARWQPTAAASD AVGRCIDETAAQQALRRLTQAGSAQIYSFEVERVREGPPLPFDLGMLQEICSAKLGLGAQEALATAQALYENHKATTYPR TDCGYLPESMLDEAPRVLHALAAAAPSLGGILKEVDPSRRSRAWNSSKITAHHGIIPTAVTLDLAQLSERERAVYTLIRA RYLAQFMPEHEYLKTQALLQSQADQLIARGKQILVRGWKAVVNEADGNEPAEQAQRLPTLRESATVALIDATLNAQSTQP PKAYTEGTLVKAMKTIANLVADPRLKQKLKDSCGLGTEATRAAIIQGLIDHGYLIKKKRSLAASAAAHTLIEAVPPEVAD PVMTALWEQALDRIESGQLSVETFLAKQAEWLTRLVRSNATLTLRPPPSKGPFCPVCCSSMRQRKGRTGSFWSCTRYPEC KGTKPVAKAKRAKNA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 0.0 | 58 |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 0.0 | 57 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 0.0 | 57 |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 1e-156 | 48 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 9e-144 | 47 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 4e-153 | 46 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 3e-153 | 46 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 4e-153 | 46 |
