Gene Information

Name : L483_11940 (L483_11940)
Accession : YP_008094174.1
Strain : Pseudomonas putida H8234
Genome accession: NC_021491
Putative virulence/resistance : Virulence
Product : DNA repair protein RadC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2569170 - 2569664 bp
Length : 495 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence : 
ATGAACCCCGCCTTGAACCTGGGCGACCCGCTCGATCCCGTACTGGCTCAACGCGTCCGTGAGGATGCGCTGATCAGCGA
GGCCCTGCAGCTGCTGGACCAACGTCACTTCCAGCGCGGCGAGGTGCTGATAACCCCCGCCGATGCCGCAGCCTACTTGA
AACTGCAACTCGCCCCTTACCACCACGAGGTGTTTGCCCTGCTCTGCCTTGACTCGCGCCACCGTGTGCTGAGCTTCGAC
ATCCTCTTCACCGGCACCATTGACGGTGCCTCCGTGTATCCCCGCCAGGTGGTGATCAAGGCCCTCGAAAACAATGCCGC
CGCCGTGATCTTCAGCCACAACCACCCCTCCGGCTGCTCTGAACCGAGCGGCGCCGATCGGGTACTCACCACCCGCCTGA
CCGAGGCTTTGGCCCTCGTCGAGGTGCGTGTCCTGGACCACATCATCGTCGGCGAAGGCTCCCCGCTTTCGTTGGCCGAG
TACGGCTGGATGTGA

Protein sequence : 
MNPALNLGDPLDPVLAQRVREDALISEALQLLDQRHFQRGEVLITPADAAAYLKLQLAPYHHEVFALLCLDSRHRVLSFD
ILFTGTIDGASVYPRQVVIKALENNAAAVIFSHNHPSGCSEPSGADRVLTTRLTEALALVEVRVLDHIIVGEGSPLSLAE
YGWM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 5e-34 53
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 5e-34 53
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 2e-32 53
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-34 53
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 4e-33 52
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 2e-22 47
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 2e-22 47
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 2e-22 47
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 9e-22 47
radC AAN62275.1 putative DNA repair protein RadC Not tested PAGI-3(SG) Protein 3e-26 46
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 2e-21 45
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 7e-22 45
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 7e-22 45
unnamed AAL08475.1 unknown Not tested SRL Protein 4e-22 45
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 8e-23 44
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 2e-21 44
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 2e-22 44
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 1e-21 44
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 2e-22 44
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 2e-22 44
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 2e-22 44
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 1e-21 44
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 9e-22 44
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 8e-22 44
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 5e-21 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
L483_11940 YP_008094174.1 DNA repair protein RadC VFG1119 Protein 1e-34 53
L483_11940 YP_008094174.1 DNA repair protein RadC VFG0660 Protein 7e-23 47
L483_11940 YP_008094174.1 DNA repair protein RadC VFG1066 Protein 2e-22 45
L483_11940 YP_008094174.1 DNA repair protein RadC VFG1678 Protein 3e-23 44
L483_11940 YP_008094174.1 DNA repair protein RadC VFG1528 Protein 4e-22 44
L483_11940 YP_008094174.1 DNA repair protein RadC VFG1617 Protein 2e-21 44