Gene Information

Name : L483_11865 (L483_11865)
Accession : YP_008094159.1
Strain : Pseudomonas putida H8234
Genome accession: NC_021491
Putative virulence/resistance : Unknown
Product : integrating conjugative element protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2557313 - 2557954 bp
Length : 642 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence :
ATGAGCCGCTTTCGCAACAAGGTGGATGCGCAACAGGCGCATATCTTCAGCCTGCGCTTGGCCGTTTCGCTCCTGGCGCT
ACTGTGCTGCGGGCTTTGGTACGGCTGGCAGTCCGCACCCTCCGAACTCACCATTCACGTGCCGCCCGATCTGCGCTCTG
GCAGTACGCGCAAGTGGTGGGATGTACCCCCGGAAAATATCTATGCCTTTGCGTTGTACATCTTCGGCCAGCTCAACCGC
TGGCCAACCAACGGCGAGGTCGACTACCACCGCGCCATCTTTGCTTTGCAGCCCTACCTGACTCCGGCGTGCAAGACCTT
CTTCGACGGCGACTTCGAGTATCGCAAGGCCGCGGGCGAACTACGCGGCCGGGTGCGCGGGGTGTACGAGGTGCTGGGTC
GCGGCTACAGCGACGATCCCGACCTGCGAGTAAAGCAGTTGGATAAGCACAGCTGGCTGGTGAAGCTCGACCTCAACGCC
GACGAGTACTACGCCGCCGAGCCGGTGAAACGCGTGGTGGTGCGTTATCCGCTGCGCGTGGTGCGCTTCGACGTAGACCC
CGAGCACAACAAGTGGGGCTTGGCCCTGGACTGCTACGAAGGCACACCGCAGAAACTGACGCTGCCTGGAGGTGCGGGAT
GA

Protein sequence :
MSRFRNKVDAQQAHIFSLRLAVSLLALLCCGLWYGWQSAPSELTIHVPPDLRSGSTRKWWDVPPENIYAFALYIFGQLNR
WPTNGEVDYHRAIFALQPYLTPACKTFFDGDFEYRKAAGELRGRVRGVYEVLGRGYSDDPDLRVKQLDKHSWLVKLDLNA
DEYYAAEPVKRVVVRYPLRVVRFDVDPEHNKWGLALDCYEGTPQKLTLPGGAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ORF SG61 AAN62283.1 hypothetical protein Not tested PAGI-3(SG) Protein 1e-50 60
pph80 CAI36121.1 hypothetical protein Not tested PPHGI-1 Protein 2e-47 59
ORF C51 AAN62145.1 hypothetical protein Not tested PAGI-2(C) Protein 1e-52 59
api35 CAF28509.1 putative exported protein Not tested YAPI Protein 2e-43 57
YpsIP31758_3709 YP_001402663.1 hypothetical protein Not tested YAPI Protein 3e-43 57
YE3486 YP_001007645.1 hypothetical protein Not tested YAPI Protein 1e-43 56
unnamed ABR13366.1 hypothetical protein Not tested PAGI-5 Protein 2e-39 56
PMI2581 YP_002152300.1 hypothetical protein Not tested Not named Protein 1e-45 55
STY4568 NP_458653.1 possible exported protein Not tested SPI-7 Protein 5e-40 55
t4265 NP_807863.1 hypothetical protein Not tested SPI-7 Protein 5e-40 55
RL026 AAP84153.1 conserved hypothetical protein Not tested PAPI-1 Protein 4e-39 55
EXA37 ABD94646.1 conserved hypothetical protein Not tested ExoU island A Protein 6e-39 54
Pmu_03110 YP_005176210.1 integrating conjugative element protein, PFL family Not tested ICEPmu1 Protein 2e-34 51