Gene Information

Name : L483_11290 (L483_11290)
Accession : YP_008094045.1
Strain : Pseudomonas putida H8234
Genome accession: NC_021491
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2438349 - 2439011 bp
Length : 663 bp
Strand : +
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence : 
ATGCGGCTGCTGCTGGTTGAGGATGATACCGCCCTGGGCGAGGGGATCTGCGACGGGTTGCGCCAAGAGGGCTACACCCT
CGACTGGCTGCGCGATGGCCTGAGCGGGCTGCATGCCCTGCAACATGAAGTGTTCGACCTGGTGATCCTCGACCTCGGGC
TGCCGCGGTTGGGCGGCATCGAGCTGCTGCGACGGGTGAGGGCAGGGGGCAACAGCTTGCCGGTACTGATCCTCACCGCG
CGCGATGCGACCGAGGACCGTATCTCTGGCCTGGATGCCGGAGCCGACGACTACCTGGTCAAACCTTTTGACCTCAATGA
GCTCAAGGCCCGCCTGCGCGCCTTGCTCAGGCGCAGCGCCGGGCGGGCCAAGGTGCTGATCGAGCACGCAGGCGTAAGCC
TGGACCCTGCCACCCAGCAGGTGCACTACAACGGCGTGCTTGTGATACTGACGCCCAAAGAGTATCGCCTGCTGCACGAG
TTGCTGGCGCAACCGGGCAAGGTGTTCACGCGTGAGCGGTTGACCCAGCTGCTGTATGGCTGGGACGAGGAGCCTGAGAG
CAACACGCTGGAGGTGAACATCTATCACCTGCGCAAGAAACTGTTCAACGGCCTGATCCGCACGGTGCGCGGTATCGGTT
ATCTGGTCGAGGCCAAGCTGTGA

Protein sequence : 
MRLLLVEDDTALGEGICDGLRQEGYTLDWLRDGLSGLHALQHEVFDLVILDLGLPRLGGIELLRRVRAGGNSLPVLILTA
RDATEDRISGLDAGADDYLVKPFDLNELKARLRALLRRSAGRAKVLIEHAGVSLDPATQQVHYNGVLVILTPKEYRLLHE
LLAQPGKVFTRERLTQLLYGWDEEPESNTLEVNIYHLRKKLFNGLIRTVRGIGYLVEAKL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 2e-29 45
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 5e-25 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-24 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
L483_11290 YP_008094045.1 transcriptional regulator BAC0487 Protein 6e-31 48
L483_11290 YP_008094045.1 transcriptional regulator NC_002516.2.879194.p Protein 1e-26 43
L483_11290 YP_008094045.1 transcriptional regulator BAC0197 Protein 5e-28 41
L483_11290 YP_008094045.1 transcriptional regulator BAC0308 Protein 5e-25 41
L483_11290 YP_008094045.1 transcriptional regulator BAC0288 Protein 9e-24 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
L483_11290 YP_008094045.1 transcriptional regulator VFG0473 Protein 2e-34 47
L483_11290 YP_008094045.1 transcriptional regulator VFG0596 Protein 2e-25 43