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Name : gabD (L483_00800) Accession : YP_008092015.1 Strain : Pseudomonas putida H8234 Genome accession: NC_021491 Putative virulence/resistance : Unknown Product : succinate-semialdehyde dehdyrogenase Function : - COG functional category : - COG ID : - EC number : 1.2.1.16 Position : 179224 - 180666 bp Length : 1443 bp Strand : + Note : catalyzes the formation of succinate from succinate semialdehyde; NADP dependent; Derived by automated computational analysis using gene prediction method: Protein Homology. DNA sequence : ATGCAGCTCAAAGACGCTCAGTTGTTCCGCCAGCAAGCCTACATCAATGGTGAGTGGCTGGATGCGGACAATGGCCAGAC CATCAAGGTGACCAACCCGGCCACCGGTGAAGTCATCGGCACCGTGCCGAAGATGGGTACCGCGGAAACCCGCCGTGCCA TCGAAGCTGCCGACAAGGCCCTGCCGGCCTGGCGTGCACTGACCGCCAAAGAGCGTTCGGCCAAGCTGCGTCGCTGGTTC GAACTGATGATCGAGAACCAGGACGACCTGGCTCGCCTGATGACCACCGAACAAGGTAAGCCACTGGCCGAAGCCAAGGG CGAAATCGCCTACGCCGCCTCGTTCATCGAGTGGTTCGCCGAAGAGGCCAAGCGCGTCTACGGTGACACCATCCCGGGCC ACCAGCCAGACAAGCGCCTGATCGTCATCAAGCAGCCAATCGGTGTTACCGCGGCCATCACCCCGTGGAACTTCCCGGCC GCCATGATCACCCGTAAAGCCGGCCCGGCCCTGGCCGCTGGCTGCACCATGGTGCTCAAGCCTGCTTCGCAAACCCCTTA CTCCGCCCTGGCCCTGGTCGAGCTGGCCCACCGTGCCGGTATCCCGGCTGGCGTGCTGAGCGTCGTGACCGGCAGCGCTG GCGAAGTTGGCGGCGAACTGACCGGCAACTCCCTGGTACGCAAGCTGTCCTTCACCGGCTCGACCGAAATCGGTCGCCAG CTGATGCAAGAGTGCGCCAAGGACATCAAGAAGGTTTCCCTGGAGCTGGGTGGTAACGCCCCCTTCATCGTGTTCGACGA TGCCGACCTGGACAAGGCGGTTGAAGGCGCGATCATCTCCAAGTACCGCAACAACGGCCAGACCTGCGTCTGCGCCAACC GTATCTACGTGCAGGACGGCGTTTATGACGCGTTCGCCCAGAAGCTGGCCGCTGCAGTTGCCAAGCTGAAGATCGGTAAC GGCCTGGAAGACGGCACCACCACGGGCCCGCTGATCGACGGTAAAGCTGTCGCCAAGGTTCAGGAACACATCGAAGACGC CGTCTCCAAAGGCGCCAAGGTGCTGTCCGGTGGCAAGCTGATCGAAGGCAACTTCTTCGAGCCGACCATCCTGGTCGACG TGCCTAAAACCGCCGCTGTCGCCAAGGAAGAGACCTTCGGCCCACTGGCGCCGCTGTTCCGCTTCAAAGACGAAGCCGAA GTCATCGCCATGTCCAACGACACCGAGTTCGGCCTGGCTTCGTACTTCTATGCCCGCGACATGAGCCGTGTGTTCCGTGT TGCCGAAGCCCTGGAATACGGCATGGTGGGTATCAACACCGGCCTGATCTCCAACGAAGTGGCACCGTTTGGTGGCATCA AGGCTTCGGGCCTGGGCCGCGAAGGTTCCAAATACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTC TGA Protein sequence : MQLKDAQLFRQQAYINGEWLDADNGQTIKVTNPATGEVIGTVPKMGTAETRRAIEAADKALPAWRALTAKERSAKLRRWF ELMIENQDDLARLMTTEQGKPLAEAKGEIAYAASFIEWFAEEAKRVYGDTIPGHQPDKRLIVIKQPIGVTAAITPWNFPA AMITRKAGPALAAGCTMVLKPASQTPYSALALVELAHRAGIPAGVLSVVTGSAGEVGGELTGNSLVRKLSFTGSTEIGRQ LMQECAKDIKKVSLELGGNAPFIVFDDADLDKAVEGAIISKYRNNGQTCVCANRIYVQDGVYDAFAQKLAAAVAKLKIGN GLEDGTTTGPLIDGKAVAKVQEHIEDAVSKGAKVLSGGKLIEGNFFEPTILVDVPKTAAVAKEETFGPLAPLFRFKDEAE VIAMSNDTEFGLASYFYARDMSRVFRVAEALEYGMVGINTGLISNEVAPFGGIKASGLGREGSKYGIEDYLEIKYLCISV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| orf17 | AAO17183.1 | Orf17 | Not tested | tcd island | Protein | 4e-155 | 68 |
| hpaE | AAO17179.1 | HpaE | Not tested | tcd island | Protein | 7e-69 | 41 |
| cur_1509 | YP_001800903.1 | NAD-dependent aldehyde dehydrogenase | Not tested | Not named | Protein | 5e-86 | 41 |
