Gene Information

Name : L483_08035 (L483_08035)
Accession : YP_008093412.1
Strain : Pseudomonas putida H8234
Genome accession: NC_021491
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1750594 - 1751274 bp
Length : 681 bp
Strand : -
Note : induced by CusR in the presence of copper; YedW induces the expression of the upstream gene yedV (encoding a sensor kinase) as well as yedW; yedVW is one of four copper regulons found in E. coli; part of the copper homeostasis mechanism; confers resistanc

DNA sequence : 
ATGAAACTGCTGATCGTCGAAGACCAGGCCCGCACCGGCCAGTACCTCAGCCAGGGCTTGAGCGAGGCCGGCTTCGCCAC
TGAGCTGGCCACCGATGGCGAAACCGGCCAGTTCCTGGCCCTGACCGGCGACCACGACCTGCTGATCCTCGACGTAATGT
TGCCTGGACGTGACGGCTGGCAGATCCTCCAGGCCGTGCGCCAGGCCGGCCTGGATACGCCAGTACTGTTCCTCACCGCC
CGCGATGCCGTCGAGGACCGCGTGCATGGCCTGGAGCTGGGCGCCGACGACTATCTGGTCAAGCCGTTCGCCTTTTCCGA
ACTGCTGGCCCGGGTGCGCAGCCTGTTGCGCCGCGGCACCAGCCCCAGCCAGGACACCACCCTGAACCTGGCCGACCTGC
GCCTGGACTTGATCCGCCGCCGCGCCGAGCGCGCCGGCCAGCGTATCGACCTGACCGCCAAGGAGTTCGCCCTGCTCGAA
CTGCTGCTGCGCCGCCAAGGCGAGGTATTGCCAAAATCGCTGATCGCCTCGCAGGTGTGGGACATGAATTTCGACAGCGA
CACCAACGTGATCGAAGTGGCGATCCGCCGCCTGCGCCTGAAAATCGACGACCCGCACCCCAACAAGCTGATCCACACCG
TACGTGGCATGGGCTATGTGCTCGAAGAGCGCACGGAATGA

Protein sequence : 
MKLLIVEDQARTGQYLSQGLSEAGFATELATDGETGQFLALTGDHDLLILDVMLPGRDGWQILQAVRQAGLDTPVLFLTA
RDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGTSPSQDTTLNLADLRLDLIRRRAERAGQRIDLTAKEFALLE
LLLRRQGEVLPKSLIASQVWDMNFDSDTNVIEVAIRRLRLKIDDPHPNKLIHTVRGMGYVLEERTE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 8e-50 54
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 7e-49 53

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
L483_08035 YP_008093412.1 transcriptional regulator BAC0638 Protein 2e-57 70
L483_08035 YP_008093412.1 transcriptional regulator BAC0083 Protein 3e-63 69
L483_08035 YP_008093412.1 transcriptional regulator BAC0197 Protein 5e-59 66
L483_08035 YP_008093412.1 transcriptional regulator BAC0111 Protein 1e-61 63
L483_08035 YP_008093412.1 transcriptional regulator BAC0308 Protein 2e-59 62
L483_08035 YP_008093412.1 transcriptional regulator BAC0125 Protein 2e-57 60
L483_08035 YP_008093412.1 transcriptional regulator BAC0347 Protein 8e-55 59
L483_08035 YP_008093412.1 transcriptional regulator NC_002516.2.879194.p Protein 5e-28 41
L483_08035 YP_008093412.1 transcriptional regulator HE999704.1.gene1528. Protein 3e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
L483_08035 YP_008093412.1 transcriptional regulator VFG0596 Protein 3e-50 54
L483_08035 YP_008093412.1 transcriptional regulator VFG1390 Protein 2e-34 44
L483_08035 YP_008093412.1 transcriptional regulator VFG1389 Protein 8e-30 43