Gene Information

Name : CCALI_00613 (CCALI_00613)
Accession : YP_008088580.1
Strain : Chthonomonas calidirosea T49
Genome accession: NC_021487
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 683779 - 684567 bp
Length : 789 bp
Strand : -
Note : -

DNA sequence : 
TTGAATAGGGGAGGCACATATCGAGGCTTCTATCAAAAGCTCACGTTTTGGATAGCTTTGGTAGTGCTAGGGTTGTTAGG
ATGTGCCGATGTGCACGCGCAGATGAATGGAGTGCCCGTACCGCACCTGCAAGTCGGCATCGGGAGCGCCAAGAACCCGC
AGGATGTTGCCGTCACGGTACAGATCTTGATTCTGCTGACAGTGCTCTCGTTGGCGCCCTCCATTCTCATTATGATGACC
TCTTTTACTAGGCTTATCATTGTGTTCTCCCTCTTACGGACGGCTTTAGGGGCGCCCCAAATCCCGCCCAATCAGGTGCT
AGTGGGCTTATCGCTGTTTCTAACGCTCTTCATTATGCGCCCGACACTACAGGCTATCAATCAAGATGCATTTCAGCCGT
ATTTGAGGAAGCAGATCAACATCGAGCAAGCGATTCAGCGGGCGGAGGATCCATTACGTGCCTTTATGATTCGTCAGACC
TATAAAAGCGATCTCTCTTTCTTTCTCAACCTCTCGCACGCTCCCCGGCCGCGCACCGCAGAGGATGTAAGCCTGATAAC
CCTGATCCCTGCCTTTCTCACCAGCGAACTGAAAACGGCGTTTATCATCGGCTTCTACATCTATTTGCCGTTCTTGGTCA
TTGATATCGTGGTGGCGAGCACCCTTATGAGTATGGGGATGATGATGTTGCCGCCGACCATTATCTCCTTGCCGGCGAAG
CTCCTGCTTTTCGTGCTTGCCGATGGGTGGACGTTGCTTATTGGCTCGTTAGCACATAGTTTTCATTGA

Protein sequence : 
MNRGGTYRGFYQKLTFWIALVVLGLLGCADVHAQMNGVPVPHLQVGIGSAKNPQDVAVTVQILILLTVLSLAPSILIMMT
SFTRLIIVFSLLRTALGAPQIPPNQVLVGLSLFLTLFIMRPTLQAINQDAFQPYLRKQINIEQAIQRAEDPLRAFMIRQT
YKSDLSFFLNLSHAPRPRTAEDVSLITLIPAFLTSELKTAFIIGFYIYLPFLVIDIVVASTLMSMGMMMLPPTIISLPAK
LLLFVLADGWTLLIGSLAHSFH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 8e-32 43
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 8e-32 43
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 6e-32 43
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 3e-30 43
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 3e-31 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 3e-31 42
lscR AAO18040.1 LscR Virulence TTSS locus Protein 4e-30 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CCALI_00613 YP_008088580.1 flagellar biosynthetic protein FliP VFG1259 Protein 4e-52 60
CCALI_00613 YP_008088580.1 flagellar biosynthetic protein FliP VFG2494 Protein 6e-53 59
CCALI_00613 YP_008088580.1 flagellar biosynthetic protein FliP VFG2338 Protein 3e-51 58
CCALI_00613 YP_008088580.1 flagellar biosynthetic protein FliP VFG2016 Protein 3e-49 56
CCALI_00613 YP_008088580.1 flagellar biosynthetic protein FliP VFG0519 Protein 4e-32 43
CCALI_00613 YP_008088580.1 flagellar biosynthetic protein FliP VFG0394 Protein 7e-31 43
CCALI_00613 YP_008088580.1 flagellar biosynthetic protein FliP VFG0188 Protein 4e-32 42