Gene Information

Name : AHML_14825 (AHML_14825)
Accession : YP_008044080.1
Strain : Aeromonas hydrophila ML09-119
Genome accession: NC_021290
Putative virulence/resistance : Unknown
Product : phage integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3348608 - 3349813 bp
Length : 1206 bp
Strand : -
Note : COG0582 Integrase

DNA sequence :
ATGCCGCTATCTGATACCGCAGCTCGACAAGCCAAGTTCACTGGTAAGCAGCAGAAGCTGTCTGATGAAAAGGGGCTCTT
TTTACTTATAACTTCATCGGGGAAGTACTGGCGCCTCAAGTTCCGCTTTGGTGGAAAAGAGAAGGTCCTGGCGCTAGGCG
TCTATCCAGAGGTTTCCTTGAAAGAAGCAAGGGTTAAGAGAGAGGAAGCACGGAGGCTGCTGGCTGATGGCATCGATCCA
AGTCTTGCCAGAAAGCAGAGCAAGGTAGCCAGCCGACTTGCCAGCGAGAACAGCTTTGAGGTCATTGCTAGGGAGTGGCA
CCAGGGGCAGCTAGCTCGCTGGAGTCCAGGCCATGCCCAGCGGGTCATCGAGTCTTTGGAAGCTGATGCTTTTCCTGAGC
TTGGGCTAGTTCCGGTTGCAGAACTAACAGCGCCTATCATGTTGGATGCTCTGCGCAAGATAGAGGCTAGGGGAGCTACA
GAAACTGCTGGGCGGGTGCTGCAACGGATCAGTTCCGTCATGCGTTACGCCATACAGACTGGGCGGGTCAGCTACAACCC
AGCCCAAGACCTGAAAGGGGCGCTAAGGGCTACCAAGCAAGAACACCGTCCAGCACTTCCACGTGCTGACTTGCCGGAAT
TTTACCGGCGCTTGGCTGCTGAGCCACTTAACCCTGCAACTCGTCTAGCTATCCACCTATTGATGTTGACGATGACTCGC
CCTGGTGAGGTGCGCTTTGCTCGCTGGGATGAGTTCGACATGGCGCGAGCAGAATGGCGGATCCCTGCTGAACGTATGAA
GATGCGCGCACCCCATATAGTCCCCCTCTCCCGGCAGGCACTTGCTGTACTTGAGGAGCTGCGTCTGATATCTGGGCATT
GTGAGCTGCTGTTCCCGAGTGAGCGTAAATTGACCGACCCCATGAGTGAAAACACCCTGAGTTATGCCATGGGGCGAATG
GGTTACAAGGGAATTGCCACCCCACATGGCTTTCGGGCTCTGGCATCCACTATCCTCAACGAGGAGGGCTTTGACCCAGA
TGTGATCGAGCGCCAGCTTGCCCATGCTGAGCGCAACAAGGTACGAGCTGCCTATCATAGGGCTGAGTACCTTGATGACC
GCCGTAAGCTTTTGCAATGGCTGGCCGATTTTTACGAATCACAACAGGGCGGGAATATTCGTCCGATGAATTTCGACAGG
GGTTAG

Protein sequence :
MPLSDTAARQAKFTGKQQKLSDEKGLFLLITSSGKYWRLKFRFGGKEKVLALGVYPEVSLKEARVKREEARRLLADGIDP
SLARKQSKVASRLASENSFEVIAREWHQGQLARWSPGHAQRVIESLEADAFPELGLVPVAELTAPIMLDALRKIEARGAT
ETAGRVLQRISSVMRYAIQTGRVSYNPAQDLKGALRATKQEHRPALPRADLPEFYRRLAAEPLNPATRLAIHLLMLTMTR
PGEVRFARWDEFDMARAEWRIPAERMKMRAPHIVPLSRQALAVLEELRLISGHCELLFPSERKLTDPMSENTLSYAMGRM
GYKGIATPHGFRALASTILNEEGFDPDVIERQLAHAERNKVRAAYHRAEYLDDRRKLLQWLADFYESQQGGNIRPMNFDR
G

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int AAD44730.1 Int Not tested SHI-2 Protein 9e-79 48
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 6e-74 48
int AAL51003.1 CP4-like integrase Not tested LEE Protein 1e-76 47
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 8e-77 47
int AAK16198.1 Int Not tested PAI-I AL862 Protein 5e-77 47
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 5e-77 47
int CAC39282.1 integrase Not tested LPA Protein 2e-79 47
aec33 AAW51716.1 Int Not tested AGI-3 Protein 1e-79 47
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 2e-77 47
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 1e-77 47
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 2e-77 47
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 2e-77 46
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 2e-77 46
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 2e-77 46
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 2e-77 46
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 1e-77 46
int AAK00456.1 Int Not tested SHI-1 Protein 1e-72 46
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 8e-76 46
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 9e-77 46
int CAC81896.1 integrase Not tested LEE II Protein 8e-72 46
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 2e-76 46
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 9e-78 46
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 2e-76 46
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 2e-76 46
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 1e-76 46
int AAL51028.1 CP4-like integrase Not tested LEE Protein 1e-76 46
int-phe AAL60261.1 Int-phe Not tested LEE Protein 1e-76 46
int ACU09430.1 integrase Not tested LEE Protein 3e-78 46
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 4e-78 46
ECs4534 NP_312561.1 integrase Not tested LEE Protein 4e-78 46
int AAC31482.1 CP4-like integrase Not tested LEE Protein 3e-78 46
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 8e-80 46
intA AAB00935.1 integrase A Not tested vap locus Protein 2e-64 46
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 7e-76 45
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 1e-71 45
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 8e-73 45
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 8e-73 45
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 4e-70 43
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 1e-63 41
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 1e-63 41
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 3e-63 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AHML_14825 YP_008044080.1 phage integrase VFG0598 Protein 8e-78 47
AHML_14825 YP_008044080.1 phage integrase VFG0626 Protein 7e-78 46
AHML_14825 YP_008044080.1 phage integrase VFG1693 Protein 4e-78 46
AHML_14825 YP_008044080.1 phage integrase VFG0783 Protein 2e-78 46
AHML_14825 YP_008044080.1 phage integrase VFG1536 Protein 3e-70 43
AHML_14825 YP_008044080.1 phage integrase VFG1092 Protein 5e-64 41