Gene Information

Name : AHML_05360 (AHML_05360)
Accession : YP_008042203.1
Strain : Aeromonas hydrophila ML09-119
Genome accession: NC_021290
Putative virulence/resistance : Virulence
Product : sigma-54 factor interaction domain-containing protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1179190 - 1180596 bp
Length : 1407 bp
Strand : +
Note : COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains

DNA sequence : 
GTGGCTGAAAGCAAACCTCGAGTCCTGTTGGTGGAAGATACCCGCAGTCTGGCGGTGGTCTATGAACAGTATCTGGCCCA
GGATGGCTACGAGGTGCTGCGGGCCGATTGCGGCCAGCATGCATTGACGCAGCTGCTGAGCAGCCCGCCGCCGGTGGTGT
TGCTGGATCTCGAGCTGCCCGACATGTCCGGCATGGACATCCTGCAGCAGATCACCGAACAGCAGCTACCCTGCTCGGTG
GTGGTGATCACCGCCCACGGCTCGGTGGACGTGGCGGTGGAAGCGATGCGGCTTGGCGCTTTCGACTTCCTGACCAAGCC
ATTCGACGGCAAGCGGCTGTGCGCCACCGCACGCAATGCCCTCAAGCACCAGCAGCTCAGCTCGCTGGTGGCCCAGTACC
GGGAGAACTTCGAGCGCAGCTCGTTTGCCGGCTTCATCGGTGCCTCCATGCCGATGCAGGCGGTCTATCGCATCATCGAG
AGCGCGGCGCCGAGCAAGGCGACCGTGTTCATCACCGGTGAGAGCGGCACCGGCAAGGAGGTGTGCGCCGAGGCCATCCA
CCAGTGCAGCCCCCGTCGCGAGCAGCCCTTCATCGCCCTCAACTGCGCCGCCATTCCCCACGACCTGATGGAGAGCGAGA
TCTTCGGCCACGTGAAGGGGTCGTTCACCGGTGCGCAGGGGGATCGCAAGGGGGCGGCCAGCCTGGCGGATGGCGGCACC
CTGTTTCTGGACGAGATCTGCGAGATGGATCTGGACCTGCAGAGCAAGCTGCTGCGCTTCATCCAGACCGGTACCCTGCA
GCGGGTCGGCAGCGGCAAGCTGGAGACGGTCGACGTGCGCTTCGTCTGCGCCACCAACCGCGATCCCCTGCTGGAGGTGA
AGGCGGGGCGTTTTCGCGAGGATCTCTACTACCGGTTGCACGTCATCCCCCTCAGCCTGCCGCCGCTGCGCGAGCGGGGC
GAGGACATACTGCTGCTGGCGCGAACCCTGCTGCAGAGTTATGCCAAGGAAGAGAACAAGCGCTTCAAGGATTTCGATGC
CGAGGCGGCGCGGGTGCTGCTCGATTACCCCTGGCCCGGCAACGTGCGCGAGCTGCAGAACGTGGTGCGCAACATAGTGG
TGCTCAACGATCGCGAGCTGGTGAGCCCCGACATCTTGCCGCCTCCGCTCAACGGCAGCCGTGCCAGCCTGCTGGCGGCG
ATCCCCGCTGCGGCAGCGACCGGCAGCGGTGCCGTGGTGGCGACCAATGCCCCGATCCGCCCGCTCTGGCTGGTGGAAAA
AGAGACCATAGAGCAGGCCATCGCCAGCTGTGACGGCAACATCCCCAAGGCGGCGGCGTTGCTGGAGATAAGCCCTTCCA
CCATCTATCGCAAGAAACAGGGCTGGGAAGAGGCGAGTCTGGCGTGA

Protein sequence : 
MAESKPRVLLVEDTRSLAVVYEQYLAQDGYEVLRADCGQHALTQLLSSPPPVVLLDLELPDMSGMDILQQITEQQLPCSV
VVITAHGSVDVAVEAMRLGAFDFLTKPFDGKRLCATARNALKHQQLSSLVAQYRENFERSSFAGFIGASMPMQAVYRIIE
SAAPSKATVFITGESGTGKEVCAEAIHQCSPRREQPFIALNCAAIPHDLMESEIFGHVKGSFTGAQGDRKGAASLADGGT
LFLDEICEMDLDLQSKLLRFIQTGTLQRVGSGKLETVDVRFVCATNRDPLLEVKAGRFREDLYYRLHVIPLSLPPLRERG
EDILLLARTLLQSYAKEENKRFKDFDAEAARVLLDYPWPGNVRELQNVVRNIVVLNDRELVSPDILPPPLNGSRASLLAA
IPAAAATGSGAVVATNAPIRPLWLVEKETIEQAIASCDGNIPKAAALLEISPSTIYRKKQGWEEASLA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 7e-57 44
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 7e-57 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AHML_05360 YP_008042203.1 sigma-54 factor interaction domain-containing protein BAC0467 Protein 6e-65 45
AHML_05360 YP_008042203.1 sigma-54 factor interaction domain-containing protein BAC0089 Protein 2e-67 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AHML_05360 YP_008042203.1 sigma-54 factor interaction domain-containing protein VFG1249 Protein 3e-58 45
AHML_05360 YP_008042203.1 sigma-54 factor interaction domain-containing protein VFG0116 Protein 3e-57 43