Gene Information

Name : K734_03185 (K734_03185)
Accession : YP_008034138.1
Strain : Idiomarina loihiensis GSL 199
Genome accession: NC_021286
Putative virulence/resistance : Virulence
Product : RadC family protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 692435 - 692911 bp
Length : 477 bp
Strand : -
Note : COG2003 DNA repair proteins

DNA sequence :
ATGCACACACTTGATAAAGGCTGTTACTCATCAGCCAACAATGAAGCTGAGCGAGACGTTTTTCATCGCGCCAGCCAGAT
CCTGGAAGAGCGCCATTTACGAGGACAAGAGCCTTACAACCCGAACGTCATTAAGGATTTCCTGACGTATAAGCTGGCGC
ACTACGAGCGTGAGGTATTCAGCATCATCTTCCTGGATGAAAAGGGCCACTTCATTGAATACAGGGAGCTGTTCTACGGC
ACCATTAATGCGGCCAGTGTTTATCCCCGCGAAGTGGTGCGAGCTGCCCTCGAAACTAAAGCATCTTCACTCGTACTGTC
ACATAACCACCCCTCGGGAGAGGCTGAACCTTCCAATGCGGATATCCGTCTTACTGAGCGCTTGCAAAAGGCCCTGGCTG
TTATCGACGTTGAGGTGAAAGACCACATCGTTGTCGGCAAAGAGTGCGTGTCATTCTCTGAGCGCGGTCTTCTTTAG

Protein sequence :
MHTLDKGCYSSANNEAERDVFHRASQILEERHLRGQEPYNPNVIKDFLTYKLAHYEREVFSIIFLDEKGHFIEYRELFYG
TINAASVYPREVVRAALETKASSLVLSHNHPSGEAEPSNADIRLTERLQKALAVIDVEVKDHIVVGKECVSFSERGLL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 5e-36 52
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 7e-33 50
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 7e-33 50
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 3e-33 50
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 7e-22 44
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 1e-24 43
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 3e-22 43
radC AAN62275.1 putative DNA repair protein RadC Not tested PAGI-3(SG) Protein 2e-19 43
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 2e-22 42
unnamed AAL08475.1 unknown Not tested SRL Protein 6e-23 41
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 8e-21 41
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 2e-21 41
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 4e-22 41
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 4e-22 41
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 4e-22 41
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 3e-22 41
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 1e-22 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
K734_03185 YP_008034138.1 RadC family protein VFG1119 Protein 2e-33 50
K734_03185 YP_008034138.1 RadC family protein VFG1678 Protein 1e-22 43
K734_03185 YP_008034138.1 RadC family protein VFG1066 Protein 2e-23 41
K734_03185 YP_008034138.1 RadC family protein VFG1528 Protein 1e-22 41
K734_03185 YP_008034138.1 RadC family protein VFG1617 Protein 7e-22 41