|
Name : K734_02335 (K734_02335) Accession : YP_008033968.1 Strain : Idiomarina loihiensis GSL 199 Genome accession: NC_021286 Putative virulence/resistance : Resistance Product : RND family efflux transporter Function : - COG functional category : - COG ID : - EC number : - Position : 487947 - 491000 bp Length : 3054 bp Strand : + Note : COG0841 Cation/multidrug efflux pump DNA sequence : ATGAATATAGCTCAATACAGCATGGAGCGAAAAACCACGAGCTGGATGTTATTTCTCATCCTGTTAATTGGTGGTCTGGT TGCCCTGACTCAACTCGGTCGCCTGGAAGACCCCAAGTTCACAATTAAGCAGGCCATGGTCATTACGCCATACCCGGGCG CATCGGCTCAGCAGGTAGAAGAAGAGGTAACCTATAAGCTGGAAAATGCGATTCAGGAGCTAAGTTACGTTGACCACGTT AAGTCTATTTCCAAGCCCGGGTTGTCGCAAATAACGGTTGAGATGAAAAGCATCTACCGCGAAGAGCACTTGCACCAAAT ATGGGACGAATTGCGGCGTAAAATTAACGACACCAAAGGTCAGCTTCCTCCGGGCACCAGCGAGCCTATTATTCGCGATG ACTTTGCTGACGTGTATGGCGTTATGATGGCCATTACCGGGCCCGATTATTCCTATAAAGATATTGAGCATTATGCTGAC TTTTTGCGTCGTGAACTGGTTTTAGTTGATGGTGTAGGCAAAGTCACTCTTGCGGGAGAGCAACAAGAGCAGGTTGTGGT AGAAGTGTCGCGCTCACGCCTGGCAAATTTTGGGGTTCCCCCCAGCCGTATTGCTGGGCTGCTGCAAACTCAGAATGCCG TAGCAAACGCCGGACGGGTAACCGTTGATCAGGAAGCATTGCGCATTGCAACCAGCGGTGAATTTGCCAATGTGGAAGAT ATGGCAAAGCTGGTTATTAGTAACCCCGGTGCTGAACAGCGTATCTACTTGCGTGATGTAGCGACCATTTATCGTGAAAC CAAAGACATTCCGGATCATGTGGTGCGCTATAACGGAAAGGCTTCCTTGTGGCTGGCATTGTCGTTTGCGGATAACGTGA ATGTTGTCGAAGTGGGCGAGCGTCTGCAAAAACGAATGGATGAGCTGGAGTATGCTAAGCCGATAGGGATGTCTGTCGAC CGTATTTACGATCAGCCGCATCAAGTTGAAAACTCAGTTAATGATTTTCTGCTGAACCTGGTAGAGGCGGTGGCCATCGT TATTATTGCATTACTGCTGACCATGGGCTTCCGTAGTGGCTTGCTTATTGGCACGGTACTGTTGTTGACGGTGCTGGGGA CCTTCATTTTTATGCGCCTGGGAGATATTAACCTGCAACGAGTTTCCCTCGGTGCGTTGATTATTGCGCTGGGCATGCTG GTGGATAACGCGATAGTCATTGCCGACGGTATTATGGTCGGTATGCGACGGGGCATGAGTAAAGTGGATGCCGCCGTTAG CGTGGTCAAGCAAAACCAGTGGCCGCTACTGGGAGCGACTGTTATCGGTATTATTGCCTTCGCGCCAATCGGTTTATCGT CAGACGCCACTGGTGAATTTGCCGGGAGTTTATTCTGGGTGATGCTCATCTCCTTGCTGCTGAGTTGGGTGACTGCACTG ACCCTCATTCCGTTTTTAGCCGACCGCTTATACTCTGCGAAGGACATTGGTAATAGCGATGAGCAGGACGATGTCTTTTC TCATCCGGTTTATCGTGGCTATAAGAAAATGCTGGCTGTTTGTTTGCGTCACCGCATTATCAGTATGCTGGTAATGCTCG TGACGTTGGTGGCAGCGGTGGTTGGATTCGGACAGGCGAAACAAGCATTTTTCCCGCCATCGACAACGCCGTTATTTTAT GTCGATCTCTGGTATCCACAGGGTACCGACATTCGTCATACCGAACAGGACTCTAAGCGCCTGGAAGACTACTTGCTGGA GAAAAGTGAAGTGACCTCCGTAGCCACGACCATAGGTCAGGGAGCCCCGCGGTTTACCTTAACTTATCTGGTGGAAAAAA GTTACGAAAGTTATGCGCAGCTACTGGTACGGGTAGAAGACAAAGACGTTATGGACTCTTTAATGCGTGACATTCGTCAG CGAATTCGTGAAGAGCATCCGGACGTAGAGGACAAACTGATACGGGTTGAAATTGGTCCGGCTACTCCGGCAAAAATTGA AGCACGTTTTTCCGGCCCGGATATTGATACCCTGCGTGAGTTAAGTAAAAAGGCCCAGGCCATTCTTGCCGAAGACTCAG GCGCAGTAAACATTCGTTCAGACTGGCGTACGCCGACCAAATTGTTGCGGCCGGAATACGACGAAGCGGCAGGCCGGCGC GCCGGCATTACGAAAGAAGACGTGAATAACCTGCTACTGGCTAATTTTGTTGGCCGACAAATTGGCATTTACCGCGATGG CACTGATTTATTACCGATAGTGCAGCGTGCGCCTGCAGCTGAGCGGGTCGACTTAGACAACTGGCAGGAACTGCAAATTT ACAGTCCGGCGTTCGACCGTTTTGTACCTTTGGCTCAAGTTGCACGTTCAATTGATGTCGTTTGGGAAGACCCTTTAATA CTCCGCCGTGACCGTAAGCGAACACTCACTGTTATGGCCGATCACGACTTACTGGGAGAGGAAACGGCCGCGCAAGTATT TGAGCGGGTCCGGCCTAAGCTTGAGGCTATCGACTTGCCGCTAGGCTACGAATTAACCTGGGGCGGCGAGCATGAAGCCG CTGGTAAAGCCGAAAAAGCGTTGTTTGGTGCCTTGCCCTTAGGTTTTCTGGTGATGTTTATTATCACCGTGCTGCTGTTT AACAGCATTCGTCAGGCCGCTGTGTTGTGGACGACCGTACCACTTTCCATTATTGGTGTGACTGTTGGGCTCCTGCTGTT GGATAAACCCTTTGGCTTTATGGCGTTACTCGGCTTCCTCAGCCTTTCCGGCATGCTGATTAAAAACGGTGTGGTGTTAC TGGAACAAGTGAATGCTGAGCTTGACGCCGGTAAAGAAGCAACCCATGCGTTAAGCGATGCTGCGGTTAGCCGTGTTCGT CCGGTAGGCATGGCGGCAGCCACCACCATTTTGGGGATGATCCCGCTGCTGTTCGATGACTTCTTTGCCAGCATGGCAAC GGTCATCATGTTTGGTCTCGGTTTTGCCACTTTGCTGACCTTGTTTGTTGTGCCTGTCATGTACGCCATAGTGCAACGAG TACCGCGCCCGTAA Protein sequence : MNIAQYSMERKTTSWMLFLILLIGGLVALTQLGRLEDPKFTIKQAMVITPYPGASAQQVEEEVTYKLENAIQELSYVDHV KSISKPGLSQITVEMKSIYREEHLHQIWDELRRKINDTKGQLPPGTSEPIIRDDFADVYGVMMAITGPDYSYKDIEHYAD FLRRELVLVDGVGKVTLAGEQQEQVVVEVSRSRLANFGVPPSRIAGLLQTQNAVANAGRVTVDQEALRIATSGEFANVED MAKLVISNPGAEQRIYLRDVATIYRETKDIPDHVVRYNGKASLWLALSFADNVNVVEVGERLQKRMDELEYAKPIGMSVD RIYDQPHQVENSVNDFLLNLVEAVAIVIIALLLTMGFRSGLLIGTVLLLTVLGTFIFMRLGDINLQRVSLGALIIALGML VDNAIVIADGIMVGMRRGMSKVDAAVSVVKQNQWPLLGATVIGIIAFAPIGLSSDATGEFAGSLFWVMLISLLLSWVTAL TLIPFLADRLYSAKDIGNSDEQDDVFSHPVYRGYKKMLAVCLRHRIISMLVMLVTLVAAVVGFGQAKQAFFPPSTTPLFY VDLWYPQGTDIRHTEQDSKRLEDYLLEKSEVTSVATTIGQGAPRFTLTYLVEKSYESYAQLLVRVEDKDVMDSLMRDIRQ RIREEHPDVEDKLIRVEIGPATPAKIEARFSGPDIDTLRELSKKAQAILAEDSGAVNIRSDWRTPTKLLRPEYDEAAGRR AGITKEDVNNLLLANFVGRQIGIYRDGTDLLPIVQRAPAAERVDLDNWQELQIYSPAFDRFVPLAQVARSIDVVWEDPLI LRRDRKRTLTVMADHDLLGEETAAQVFERVRPKLEAIDLPLGYELTWGGEHEAAGKAEKALFGALPLGFLVMFIITVLLF NSIRQAAVLWTTVPLSIIGVTVGLLLLDKPFGFMALLGFLSLSGMLIKNGVVLLEQVNAELDAGKEATHALSDAAVSRVR PVGMAAATTILGMIPLLFDDFFASMATVIMFGLGFATLLTLFVVPVMYAIVQRVPRP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| VC0395_A1355 | YP_001217299.1 | AcrB/AcrD/AcrF family transporter | Not tested | VPI-2 | Protein | 0.0 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| K734_02335 | YP_008033968.1 | RND family efflux transporter | BAC0428 | Protein | 0.0 | 55 |
| K734_02335 | YP_008033968.1 | RND family efflux transporter | BAC0526 | Protein | 0.0 | 54 |
| K734_02335 | YP_008033968.1 | RND family efflux transporter | BAC0519 | Protein | 0.0 | 54 |
| K734_02335 | YP_008033968.1 | RND family efflux transporter | BAC0425 | Protein | 0.0 | 43 |
