Gene Information

Name : NH44784_058961 (NH44784_058961)
Accession : YP_008032960.1
Strain : Achromobacter xylosoxidans NH44784-1996
Genome accession: NC_021285
Putative virulence/resistance : Virulence
Product : Response regulator of zinc sigma-54-dependent two-component system
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 6336961 - 6338292 bp
Length : 1332 bp
Strand : -
Note : -

DNA sequence : 
ATGGCCCGTATCCTGATCGTCGATGACGACGCGGCTTTCCGCGAGAGCCTTTCCGAAACGCTGCACGACCTGGGCCACAC
CGCGTTGCAGGCCTCGTCCACCGTCGCCGGCTTGAATCGCCTGCGTACCGAGGCTGTGGACCTGGCGATCGTCGACCTGC
GCATGCCGGGCGAGGACGGCCTGGTGTTCCTGCGCAAGGCGGCCGGCATAGCGCCGGTTCCCTGCATCATGTTGACGGCC
TATGCGAGCGGCGGCAACACCATCGAGGCGATGCGCCTGGGCGCCTTCGACCACCTGACCAAACCGGTGGCGCGCGCGGC
GCTGGTGCAAACGCTCGAACGCGCCCTGGACAGTGCCAGGGTCGCCGGTGATGACGGCGCCGACGCCGACACGGCGCCGG
CCGACGAATTCGAGTTGGTCAGCGGCAGCGAGGCCATGCGCGAGGTTTTCAAGCGGATCGGCATGGCCGCGCGCGGCGAT
GCCACTGTCCTGATTCAGGGCGAAACCGGCACGGGCAAGGAACTGGTGGCCCGCGCCCTGCATCGGAACGGCGCGCGCGC
CGCGCGGCCGTTCGTCGCGGTGAACTGCGCCGCCATTCCCGCCGACTTGATGGAAAGCGAACTGTTCGGCCACGTCAAGG
GCGCCTACACCGGCGCCACCGGCGATCGCGCCGGCCGTTTCCGCGAGGCCGAAGGCGGCACGCTGTTCCTGGACGAAATC
GGCGACATGCCGCTTGCGACCCAGGCCAAGATTTTGCGCGCGCTGCAGGAGCGCGAAATCACGCCGGTCGGCGGGGCCCG
CACGGTGCCGGTGGATGTGCGCATCGTCGCGGCGACGCATCGGGATCTGCCGGCCGCGGTCGCGGCCGGCAGGTTCCGCG
AAGACCTGTGGTACCGGTTGCAGGTGGTGCCCATCGCCTTGCCGCCGCTGCGCGAGCGTTTGGGCGACGTGCTGCTGCTG
GCCGAGCACTTCCTGCGACGCGGCGGCGGCACGCCGAAGCGTCTTTCCGCCGCGGCCGCGCAACGGCTGCTGGCGCACAA
CTGGCCCGGCAACGTGCGCGAACTGCGCAATGCCATGGAACGGGCGGCGATTCTCAGTCGTGGCGCCAGCATCGAACCGG
AACACATCGGCCTGCAGCCGCTGGGGATCGCCCAAGATGGGTTCGCCATCCCCCTGGATGGCTCCCTGGCCCAGGCAGTG
GCGGCGTTGGAAGGCGCCATGATCCGGCGCGCTTTGGCGGCCGCTGCCGGCAATCGCGCCGAGGCCGCGCGGCGCCTGGG
GCTGTCGCGCCAGCAGCTGTATCGCAAATTGGCCGAGCACGGCGTGGAATGA

Protein sequence : 
MARILIVDDDAAFRESLSETLHDLGHTALQASSTVAGLNRLRTEAVDLAIVDLRMPGEDGLVFLRKAAGIAPVPCIMLTA
YASGGNTIEAMRLGAFDHLTKPVARAALVQTLERALDSARVAGDDGADADTAPADEFELVSGSEAMREVFKRIGMAARGD
ATVLIQGETGTGKELVARALHRNGARAARPFVAVNCAAIPADLMESELFGHVKGAYTGATGDRAGRFREAEGGTLFLDEI
GDMPLATQAKILRALQEREITPVGGARTVPVDVRIVAATHRDLPAAVAAGRFREDLWYRLQVVPIALPPLRERLGDVLLL
AEHFLRRGGGTPKRLSAAAAQRLLAHNWPGNVRELRNAMERAAILSRGASIEPEHIGLQPLGIAQDGFAIPLDGSLAQAV
AALEGAMIRRALAAAAGNRAEAARRLGLSRQQLYRKLAEHGVE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 1e-60 44
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 1e-60 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NH44784_058961 YP_008032960.1 Response regulator of zinc sigma-54-dependent two-component system BAC0467 Protein 4e-74 45
NH44784_058961 YP_008032960.1 Response regulator of zinc sigma-54-dependent two-component system BAC0089 Protein 1e-67 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NH44784_058961 YP_008032960.1 Response regulator of zinc sigma-54-dependent two-component system VFG1214 Protein 4e-67 45
NH44784_058961 YP_008032960.1 Response regulator of zinc sigma-54-dependent two-component system VFG1249 Protein 5e-66 45
NH44784_058961 YP_008032960.1 Response regulator of zinc sigma-54-dependent two-component system VFG0116 Protein 2e-57 43