Gene Information

Name : NH44784_041011 (NH44784_041011)
Accession : YP_008031167.1
Strain : Achromobacter xylosoxidans NH44784-1996
Genome accession: NC_021285
Putative virulence/resistance : Resistance
Product : Tetracycline efflux protein TetA
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4377649 - 4378845 bp
Length : 1197 bp
Strand : +
Note : -

DNA sequence : 
ATGCCGGACCGCGCCATTGCCTTGCTGTTGTTCATCGTCACCCTGGATGCCGCGGGCGCCGGGTTGATCATGCCGGTGCT
GCCGGGCCTGCTCGACCAGCTTGGCGATGCCGCGGCCACGCCGGCCCATTACGGGGTGCTGCTGTCCCTGTATGCGCTGG
CGCAGTGCCTGGCCGCGCCCGTGCTGGGCGCGCTGTCGGATCGCTACGGAAGGCGGCCGGTGCTGCTGGTGTCGCTGGCG
GGCGCCGCCGTCGACTATCTGGTGATGGCGGCCGCGCCGGCATTGTGGGTGCTGTACGCGGGACGCATCCTGGCGGGCAT
TACGGGCGCCACCGGCGCGGTGGCCGGCGCCTGCATCGCCGACGCCGGCGATCCGTCGCGGCGCGCGCGGCGCTTCGGCC
AGTTGTCGGCCTGTTTCGGGCTGGGCATGATCCTCGGGCCGGCGCTGGGCGGCCTGGCGGGCCTGGCCGGCGCCCGCATG
CCGTTCGTGGCGGCCGCGGCGGCCAATGGCGTGGCCTTCCTGACGGCCCTGGCGTGGCTGCCGGAATCGCGCCGGGGCGC
TCGCGCGCCGTGGTCGTGGCGCGCGCTGGATCCGATTGGCGGCCTGCGCCAGGCACTGGGCGGCAAGAACCTGGCCGGCC
TGCTGTGGGTGTTCCTGGTGATGCAGATGGCGGGGCAGGTGCCGGGATCCCTATGGGTGCTGTACGGACAGGACCGCTTT
CAGTGGGACGCGGCGGCGGTGGGCCTGTCGCTGGCCGGGTTCGGCGCCTTGCACGCCGTGGCGCAGGCGACGCTGCCGGG
CCCGTTGAGCGCGCGCTTGGGTGAGCGCGGTGCGCTGGTGGTGGGCATGGCGGCGGACGCGGCAGGTTATGTCCTGCTGG
CGTGCGCCACGCAGGGCTGGATGGCGGCGCCGCTGATGCTGCTGCTGGCCGCCGGCGGCGTGGGCGCGCCGGCGTTGCAG
GCGCTGCTGTCGGCGCGGGCGGGCGCGGGCAGCCAGGGGCAGTTGCAGGGCGCCATGAACAGCCTGGCCAGTGCCGCCGC
GATCGCCGGCCCGCTGGCCTTTACCACGTTGTACGCGGCCAGCGTCGGCGGCTGGACCGGCTGGCCCTGGGTGGCGGGCG
CGGCGCTCTACCTGCTGTGCGCGCCGACGCTGGCGCGGCTGGGCGCGCCTGGCGACGCGGCGCCGCGGGCCCGCTAG

Protein sequence : 
MPDRAIALLLFIVTLDAAGAGLIMPVLPGLLDQLGDAAATPAHYGVLLSLYALAQCLAAPVLGALSDRYGRRPVLLVSLA
GAAVDYLVMAAAPALWVLYAGRILAGITGATGAVAGACIADAGDPSRRARRFGQLSACFGLGMILGPALGGLAGLAGARM
PFVAAAAANGVAFLTALAWLPESRRGARAPWSWRALDPIGGLRQALGGKNLAGLLWVFLVMQMAGQVPGSLWVLYGQDRF
QWDAAAVGLSLAGFGALHAVAQATLPGPLSARLGERGALVVGMAADAAGYVLLACATQGWMAAPLMLLLAAGGVGAPALQ
ALLSARAGAGSQGQLQGAMNSLASAAAIAGPLAFTTLYAASVGGWTGWPWVAGAALYLLCAPTLARLGAPGDAAPRAR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetA YP_006098396.1 tetracycline resistance protein Not tested Tn2411 Protein 1e-65 61
tetA(A) ACK44537.1 TetA(A) Not tested SGI1 Protein 8e-66 61
tetA(A) AGK07027.1 TetA(A) Not tested SGI1 Protein 8e-66 61
tetA(A) AGK07085.1 TetA(A) Not tested SGI1 Protein 8e-66 61
tetA(A) ACN81011.1 TetA(A) Not tested AbaR5 Protein 8e-66 61
tetA CAJ77066.1 Tetracycline resistance protein Not tested AbaR1 Protein 6e-66 61
tetA CAJ77034.1 Tetracycline resistance protein Not tested AbaR1 Protein 8e-59 59
tetA(G) AGK07104.1 TetA(G) Not tested SGI1 Protein 2e-56 59
tet(G) AAK02051.1 tetracycline resistance protein Not tested SGI1 Protein 2e-56 59
tetA(G) ABZ01843.1 TetA(G) Not tested SGI2 Protein 2e-56 59
tetA(G) AGK06974.1 TetA(G) Not tested SGI1 Protein 2e-56 59
tetB AEA34667.1 tetracycline resistance determinant Not tested Not named Protein 1e-37 44
tetA(B) AEZ06045.1 tetracycline efflux protein Not tested Tn6167 Protein 1e-37 44
tetA(B) AAL08445.1 tetracycline resistance protein TetA(B) Not tested SRL Protein 1e-37 44
BJAB07104_00277 YP_008207742.1 Permeases of the major facilitator superfamily Not tested AbaR25 Protein 1e-37 44
BJAB0868_00281 YP_008211607.1 Permeases of the major facilitator superfamily Not tested AbaR26 Protein 1e-37 44
tetA(B) AEQ20905.1 tetracycline resistance protein Not tested Tn6166 Protein 1e-37 44
tetA YP_005797160.1 tetracycline resistance protein, class G (TETA(G)) Not tested AbaR4e Protein 1e-37 44
ABZJ_00260 YP_005524216.1 Tetracycline resistance protein, class B (TETA(B) ) (Metal-tetracycline/H(+) antiporter) Not tested AbaR22 Protein 1e-37 44
tetA(B) AFH57202.1 tetracycline resistance protein Not tested AbaR4a Protein 9e-38 44
tet(H) YP_005176248.1 tetracycline efflux protein, class H Not tested ICEPmu1 Protein 7e-35 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NH44784_041011 YP_008031167.1 Tetracycline efflux protein TetA NC_011586.7045189.p0 Protein 1e-60 62
NH44784_041011 YP_008031167.1 Tetracycline efflux protein TetA X75761.gene.p01 Protein 3e-65 61
NH44784_041011 YP_008031167.1 Tetracycline efflux protein TetA NC_010410.6002597.p0 Protein 3e-66 61
NH44784_041011 YP_008031167.1 Tetracycline efflux protein TetA CP001485.1.gene2821. Protein 3e-66 61
NH44784_041011 YP_008031167.1 Tetracycline efflux protein TetA AF534183.gene.p01 Protein 4e-66 61
NH44784_041011 YP_008031167.1 Tetracycline efflux protein TetA NC_010410.6002612.p0 Protein 5e-59 59
NH44784_041011 YP_008031167.1 Tetracycline efflux protein TetA AF133140.gene.p01 Protein 5e-59 59
NH44784_041011 YP_008031167.1 Tetracycline efflux protein TetA AF133139.gene.p01 Protein 2e-59 59
NH44784_041011 YP_008031167.1 Tetracycline efflux protein TetA Y19114.gene.p01 Protein 1e-59 58
NH44784_041011 YP_008031167.1 Tetracycline efflux protein TetA AY264780.2.gene3.p01 Protein 2e-46 52
NH44784_041011 YP_008031167.1 Tetracycline efflux protein TetA AF070999.gene.p01 Protein 1e-50 49
NH44784_041011 YP_008031167.1 Tetracycline efflux protein TetA Y19116.gene.p01 Protein 5e-38 49
NH44784_041011 YP_008031167.1 Tetracycline efflux protein TetA L06940.gene.p01 Protein 1e-38 49
NH44784_041011 YP_008031167.1 Tetracycline efflux protein TetA L06798.gene.p01 Protein 9e-34 48
NH44784_041011 YP_008031167.1 Tetracycline efflux protein TetA AF121000.gene.p01 Protein 7e-39 47
NH44784_041011 YP_008031167.1 Tetracycline efflux protein TetA AY743590.gene.p01 Protein 4e-40 47
NH44784_041011 YP_008031167.1 Tetracycline efflux protein TetA AF090987.gene.p01 Protein 2e-33 46
NH44784_041011 YP_008031167.1 Tetracycline efflux protein TetA AJ420072.gene.p01 Protein 8e-36 46
NH44784_041011 YP_008031167.1 Tetracycline efflux protein TetA AF038993.gene.p01 Protein 5e-39 45
NH44784_041011 YP_008031167.1 Tetracycline efflux protein TetA CP004022.1.gene2534. Protein 1e-38 45
NH44784_041011 YP_008031167.1 Tetracycline efflux protein TetA V00611.gene.p01 Protein 1e-37 44
NH44784_041011 YP_008031167.1 Tetracycline efflux protein TetA AB084246.gene.p01 Protein 6e-38 44
NH44784_041011 YP_008031167.1 Tetracycline efflux protein TetA NC_010558.1.6275971. Protein 6e-38 44
NH44784_041011 YP_008031167.1 Tetracycline efflux protein TetA Y15510.gene.p01 Protein 9e-36 44
NH44784_041011 YP_008031167.1 Tetracycline efflux protein TetA NC_011586.7043399.p0 Protein 1e-18 42
NH44784_041011 YP_008031167.1 Tetracycline efflux protein TetA NC_011595.7059241.p0 Protein 1e-18 42
NH44784_041011 YP_008031167.1 Tetracycline efflux protein TetA NC_010410.6003291.p0 Protein 1e-18 42
NH44784_041011 YP_008031167.1 Tetracycline efflux protein TetA AJ250203.gene.p01 Protein 2e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NH44784_041011 YP_008031167.1 Tetracycline efflux protein TetA VFG1036 Protein 6e-38 44