Gene Information

Name : NH44784_041001 (NH44784_041001)
Accession : YP_008031166.1
Strain : Achromobacter xylosoxidans NH44784-1996
Genome accession: NC_021285
Putative virulence/resistance : Virulence
Product : Transcriptional regulator, TetR family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4376968 - 4377567 bp
Length : 600 bp
Strand : -
Note : -

DNA sequence :
ATGGCCAAACTGCAACGCGACGCCGTCATCGCCGCCGCGCTGGACTTGCTGAACGAGGTGGGCGTGGACGGCCTGACCAC
GCGCAAGCTGGCCGAACGCCTGGGCGTGCAGCAACCGGCGCTGTACTGGCATTTCAAGAGCAAGCAGGCGCTGCTGGACG
CGCTGTCGGACGCCATGATGCGCGAGCACATGCATACCCTGCCGTCTCCGGGCGGCCCCTGGAAGGAATTCCTGTACGCC
AACGCGCGCAGCTTCCGCCGCGCGCTGCTGGCCTATCGCGACGGCGCCCGCATCCACGCCGGCACCCGCCCCGCCGAACC
GCAATACGATCGCGTCCAGGCGCAGATCAAGCTGCTGTGCGACGCGGGCTTCACGCCGCTGCGGGCCGCCAATGCGCTGG
TGGCCATCAGCCACTACGTGGTCGGCTCGGTGATGGAACAGCAGGCCGGCGAGGCCGCCGCGCCCGAGCGCGTCGCGCCG
CCCGCGCCCCCGCCCGCCCTGGCACGCACCATGAAGGCGCTGGACCGGCAGGGACCGGACGCGACCTTCGAATATGGATT
GGCGATGATGCTCGACGGCCTCTCGCCCGACCTGCCATGA

Protein sequence :
MAKLQRDAVIAAALDLLNEVGVDGLTTRKLAERLGVQQPALYWHFKSKQALLDALSDAMMREHMHTLPSPGGPWKEFLYA
NARSFRRALLAYRDGARIHAGTRPAEPQYDRVQAQIKLLCDAGFTPLRAANALVAISHYVVGSVMEQQAGEAAAPERVAP
PAPPPALARTMKALDRQGPDATFEYGLAMMLDGLSPDLP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetR(A) AGK07026.1 TetR(A) Not tested SGI1 Protein 2e-50 60
tetR(A) AGK07084.1 TetR(A) Not tested SGI1 Protein 2e-50 60
tetR YP_006098395.1 tetracycline repressor Not tested Tn2411 Protein 3e-50 60
tetR(A) ACK44536.1 TetR(A) Not tested SGI1 Protein 2e-50 60
tetR CAJ77065.1 Tetracycline repressor protein Not tested AbaR1 Protein 2e-50 60
tetR(A) ACN81010.1 repressor protein Not tested AbaR5 Protein 2e-50 60
tetR AAK02050.1 tetracycline resistance regulator protein Not tested SGI1 Protein 8e-47 56
tetR ABZ01841.1 TetR Not tested SGI2 Protein 8e-47 56
tetR CAJ77033.1 Tetracycline repressor protein Not tested AbaR1 Protein 8e-47 56
tetR(G) AGK06973.1 TetR(G) Not tested SGI1 Protein 8e-47 56
tetR(G) AGK07103.1 TetR(G) Not tested SGI1 Protein 8e-47 56
tetR1 YP_005176239.1 tetracycline repressor protein Not tested ICEPmu1 Protein 6e-45 48
tetR2 YP_005176247.1 tetracycline repressor protein Not tested ICEPmu1 Protein 6e-45 48
BJAB0868_00282 YP_008211608.1 Transcriptional regulator Not tested AbaR26 Protein 5e-42 47
tetR AEA34668.1 tetracycline repressor protein Not tested Not named Protein 3e-42 47
BJAB07104_00278 YP_008207743.1 Transcriptional regulator Not tested AbaR25 Protein 5e-42 47
tetR AFV47998.1 repressor protein TetR Not tested delta-AbaR25 Protein 4e-42 47
ABZJ_00261 YP_005524217.1 tetracycline repressor protein TetR Not tested AbaR22 Protein 5e-42 47
tetR YP_005797161.1 tetracycline repressor protein class G Not tested AbaR4e Protein 5e-42 47
tetR(B) AEQ20906.1 tetracycline repressor protein Not tested Tn6166 Protein 5e-42 47
tetR AFH57203.1 repression protein Not tested AbaR4a Protein 4e-42 47
tetR(B) AEZ06046.1 repressor protein Not tested Tn6167 Protein 5e-42 47
tetR AFV47970.1 repressor protein TetR Not tested AbaR25 Protein 4e-42 47
tetR AAL08444.1 tet repressor Not tested SRL Protein 3e-40 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NH44784_041001 YP_008031166.1 Transcriptional regulator, TetR family VFG1035 Protein 1e-40 46