Gene Information

Name : NH44784_016901 (NH44784_016901)
Accession : YP_008028784.1
Strain : Achromobacter xylosoxidans NH44784-1996
Genome accession: NC_021285
Putative virulence/resistance : Virulence
Product : DNA-binding heavy metal response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1796728 - 1797414 bp
Length : 687 bp
Strand : +
Note : -

DNA sequence : 
ATGCGCATCCTGGTCATCGAAGACGAACCCAAGCTGGCCGACTACCTCAAGAAAGGCCTGTCGGAGCAGAGCCATGTCGT
CGACCTGGCGCGCGACGGCGTCAACGGCCTGCACCTGGCGCTGGAAGGCGCCTACGACCTGATCGTGCTGGACGTGATGC
TGCCCGGCGTGGATGGCTTCGGCATCCTGGCCGCGGTGCGCGCCAACAAGGACACGCCGATCCTGATGCTGACCGCGCGC
GACGCCGTCGAGGACCGCGTGCGCGGGCTGGAAGGCGGCGCCGACGATTACCTGATCAAGCCCTTCGCCTTCTCCGAGCT
GCTGGCCCGCGTGCAGGCGCTGCTGCGGCGCGGCCGCTCGCAGGAACCCACCGTGTTCCGCCTGGCCGACCTGGAACTGG
ACCTGGCGCGGCGCAAGGTCGCGCGCGGCGGCCGCCGCCTGGACCTGACCGCCAAGGAATTCAACCTGCTGGCCCTGCTG
CTGCGGCGCCAGGGCCAGGTGCTGTCGCGCACCACCCTGGCCGAACAGGTCTGGGACATGAATTTCGACAGCGACACCAA
CGTCATCGACGTGGCCGTGCGGCGCCTGCGCAGCAAGCTGGACGACCCGTTCGAAGCCAAGCTGCTGCACACCGTGCGCG
GCATGGGCTACGTGCTCGAATCGCGGCCGGAGCCCGCGCGCGGATGA

Protein sequence : 
MRILVIEDEPKLADYLKKGLSEQSHVVDLARDGVNGLHLALEGAYDLIVLDVMLPGVDGFGILAAVRANKDTPILMLTAR
DAVEDRVRGLEGGADDYLIKPFAFSELLARVQALLRRGRSQEPTVFRLADLELDLARRKVARGGRRLDLTAKEFNLLALL
LRRQGQVLSRTTLAEQVWDMNFDSDTNVIDVAVRRLRSKLDDPFEAKLLHTVRGMGYVLESRPEPARG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-55 54
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-55 53

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NH44784_016901 YP_008028784.1 DNA-binding heavy metal response regulator BAC0638 Protein 4e-53 63
NH44784_016901 YP_008028784.1 DNA-binding heavy metal response regulator BAC0197 Protein 7e-63 63
NH44784_016901 YP_008028784.1 DNA-binding heavy metal response regulator BAC0125 Protein 2e-63 62
NH44784_016901 YP_008028784.1 DNA-binding heavy metal response regulator BAC0083 Protein 1e-58 61
NH44784_016901 YP_008028784.1 DNA-binding heavy metal response regulator BAC0111 Protein 2e-60 61
NH44784_016901 YP_008028784.1 DNA-binding heavy metal response regulator BAC0308 Protein 6e-58 60
NH44784_016901 YP_008028784.1 DNA-binding heavy metal response regulator BAC0347 Protein 5e-51 54
NH44784_016901 YP_008028784.1 DNA-binding heavy metal response regulator HE999704.1.gene1528. Protein 5e-32 45
NH44784_016901 YP_008028784.1 DNA-binding heavy metal response regulator AE000516.2.gene3505. Protein 4e-29 43
NH44784_016901 YP_008028784.1 DNA-binding heavy metal response regulator NC_013450.8614146.p0 Protein 4e-38 42
NH44784_016901 YP_008028784.1 DNA-binding heavy metal response regulator NC_002951.3238224.p0 Protein 4e-38 42
NH44784_016901 YP_008028784.1 DNA-binding heavy metal response regulator NC_007793.3914065.p0 Protein 4e-38 42
NH44784_016901 YP_008028784.1 DNA-binding heavy metal response regulator NC_002758.1121390.p0 Protein 4e-38 42
NH44784_016901 YP_008028784.1 DNA-binding heavy metal response regulator NC_010079.5776364.p0 Protein 4e-38 42
NH44784_016901 YP_008028784.1 DNA-binding heavy metal response regulator NC_002952.2859858.p0 Protein 4e-38 42
NH44784_016901 YP_008028784.1 DNA-binding heavy metal response regulator NC_007622.3794948.p0 Protein 4e-38 42
NH44784_016901 YP_008028784.1 DNA-binding heavy metal response regulator NC_003923.1003417.p0 Protein 4e-38 42
NH44784_016901 YP_008028784.1 DNA-binding heavy metal response regulator NC_002516.2.879194.p Protein 1e-29 42
NH44784_016901 YP_008028784.1 DNA-binding heavy metal response regulator AE015929.1.gene1106. Protein 2e-34 42
NH44784_016901 YP_008028784.1 DNA-binding heavy metal response regulator Y16952.3.orf35.gene. Protein 3e-24 41
NH44784_016901 YP_008028784.1 DNA-binding heavy metal response regulator NC_003923.1003749.p0 Protein 8e-32 41
NH44784_016901 YP_008028784.1 DNA-binding heavy metal response regulator NC_007622.3794472.p0 Protein 5e-32 41
NH44784_016901 YP_008028784.1 DNA-binding heavy metal response regulator NC_002745.1124361.p0 Protein 8e-32 41
NH44784_016901 YP_008028784.1 DNA-binding heavy metal response regulator NC_009782.5559369.p0 Protein 8e-32 41
NH44784_016901 YP_008028784.1 DNA-binding heavy metal response regulator NC_002951.3237708.p0 Protein 8e-32 41
NH44784_016901 YP_008028784.1 DNA-binding heavy metal response regulator NC_002952.2859905.p0 Protein 6e-32 41
NH44784_016901 YP_008028784.1 DNA-binding heavy metal response regulator NC_002758.1121668.p0 Protein 8e-32 41
NH44784_016901 YP_008028784.1 DNA-binding heavy metal response regulator NC_009641.5332272.p0 Protein 8e-32 41
NH44784_016901 YP_008028784.1 DNA-binding heavy metal response regulator NC_013450.8614421.p0 Protein 8e-32 41
NH44784_016901 YP_008028784.1 DNA-binding heavy metal response regulator NC_007793.3914279.p0 Protein 8e-32 41
NH44784_016901 YP_008028784.1 DNA-binding heavy metal response regulator CP000675.2.gene1535. Protein 6e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NH44784_016901 YP_008028784.1 DNA-binding heavy metal response regulator VFG0596 Protein 7e-56 54
NH44784_016901 YP_008028784.1 DNA-binding heavy metal response regulator VFG1390 Protein 6e-40 46
NH44784_016901 YP_008028784.1 DNA-binding heavy metal response regulator VFG1389 Protein 3e-33 46
NH44784_016901 YP_008028784.1 DNA-binding heavy metal response regulator VFG1386 Protein 5e-32 42