Name : NH44784_014751 (NH44784_014751) Accession : YP_008028570.1 Strain : Achromobacter xylosoxidans NH44784-1996 Genome accession: NC_021285 Putative virulence/resistance : Virulence Product : Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV Function : - COG functional category : - COG ID : - EC number : - Position : 1552395 - 1554488 bp Length : 2094 bp Strand : + Note : - DNA sequence : ATGCAAGCCCTGAACCGCGTCGTCGCCGCCGCCACCAGCCGCAACGATATCGTCCTGGCGGTCCTGATCGTCTCGATCAT CTTCATGATGATCCTGCCGCTGCCCACGACGCTGGTCGACGTGCTGATCGGCGCCAACATGACGCTGTCGGCCATCCTGC TGATGGTGGCCATGTACCTGCCATCGCCGCTGGCGTTCTCGTCGTTCCCGTCGGTGCTGCTGGTCACCACGCTGTTCCGC CTGGGCATCTCGATCGCCACCACCCGCCTGATCCTGCTGCAGGGCGATGCCGGCCACATCATCGAGACCTTCGGCAACTT CGTGGTGGGCGGCAATCTCATTGTCGGCCTGGTGGTGTTCCTGATCCTCACCATCGTGCAATTCGTGGTCATCACCAAGG GCGCCGAGCGCGTGGCCGAAGTAGCGGCGCGCTTCTCGCTGGACGCCATGCCCGGCAAGCAGATGTCGATCGACGCCGAC CTGCGCGCCGGCACCATCGACATGGACGAGGCGCGCAAGCGCCGCTCGGTGGTGGAAAAGGAAAGCCAGCTGTACGGCGC CATGGACGGCGCCATGAAATTCGTCAAGGGCGACGCCATCGCCGGACTCATCATCGTCGCGGTCAACCTGCTGGGCGGCA TCCTCATCGGCACCATGCAGCGCGGCCTGTCCGCCGGCGAGGCGGTGCAGGTGTACTCGATCCTGACCATCGGCGACGGC CTGATCGCGCAAATCCCGGCGCTGTTCATCGCCATCTGCGCCGGCATCATCGTGACCCGGGTGCAGACCGGCGACGGCCC CTCCAACGTCGGCAAGGACATCGGCGCCCAGGTGCTGGCGCAACCGCGCGCGCTCTTGATCGCCGCCGCCATCGCGATCG GCATGGGCCTGATCCCGGGCATGCCGACCCTGACCTTCCTGGCGCTGGCCGCGGTGGTCGGCACCATCGGCTTCGTGCTG CTGCGCGGCACGCGCAAGGTGGTGGACGAGAAGACCGGCGAGATCACCGAAATCCCCGCCCTGGCGGCCGATGGCCAGAA GCCGCAGGCCAGGCCGCGCGCCGACGGCAGCGCCGAGTTCGCGCCCACCCTGCCGCTGATGATCGACGTGGCCGCCGCGC TGCAACGCAGCTTCGACGCCGACGAGCTCAACGAAGAACTGCTGAAGATCCGCCGCGCGCTCTATTTCGACCTGGGCGTG CCGTTCCCCGGCATCCAGCTGCGCTTCAACGACGCGCTGCCGGCGGACAGCTACAACATCCTGCTGTCCGAAGTGCCGGT CTCCCAGGGCAAGCTGCGGCCGGGCGCGGTGCTGGTGCGCGACACGGAACAGAACCTGCAGGCGCTGCAGGTGCCCTACG AAACCGACAAGCGCTTCCTGCCCAACGTCCCGACGCTCTGGGTCGACGCCGGCCTGGCGCCCACCTTGACGGCCGCCGGC ATCCCGTTCCTGGACCCGCACCAGGTGCTGACCTGGCACCTGGCCTTCGTGCTGAAGAAATACTCGTCGGACTTCATCGG CATCCAGGAAACGCGCTTCCTGTTGACGGCCATGGAAGACCGCTTCCCCGACCTGGTCAAGGAAGCGCTGCGGGTGATGC CGGTGCAGAAGATCGCCGAGATCCTGCAGCGGCTGGTGTCCGAGGACATCTCTGTGCGCAACCTGCGCGCGGTGCTGGAA GCGCTGATCGAATGGGGACAGAAGGAAAAGGACTCGGTGCTGCTGACCGAATACGTGCGCGTCTCTCTCAAGCGCCACAT CAGCTACAAGTACTCCAGCGGCCAGAACATCCTGCCGGCCTACCTGCTGGCGCCCAACGTCGAAGAAACCGTGCGCGGCG CCATCCGCCAGACCTCGGCCGGCAGCTACCTGGCGCTCGACCCCAATGCCTCCAGGAAGCTGGTGGACAACATCAAGCGC GTCGCCGGCGACCTGACGGCGGCAGCCCAGAAGCCCGTGCTGCTGACCTCGATGGACATCCGGCGCTACCTGCGCAAGAT GATCGAGCAGGACCTGTACGAGCTGCCGGTGCTGTCCTACCAGGAGCTGACCCAGGAAATCAACGTGCAGCCGCTGGCCC GGGTGGATCTGTGA Protein sequence : MQALNRVVAAATSRNDIVLAVLIVSIIFMMILPLPTTLVDVLIGANMTLSAILLMVAMYLPSPLAFSSFPSVLLVTTLFR LGISIATTRLILLQGDAGHIIETFGNFVVGGNLIVGLVVFLILTIVQFVVITKGAERVAEVAARFSLDAMPGKQMSIDAD LRAGTIDMDEARKRRSVVEKESQLYGAMDGAMKFVKGDAIAGLIIVAVNLLGGILIGTMQRGLSAGEAVQVYSILTIGDG LIAQIPALFIAICAGIIVTRVQTGDGPSNVGKDIGAQVLAQPRALLIAAAIAIGMGLIPGMPTLTFLALAAVVGTIGFVL LRGTRKVVDEKTGEITEIPALAADGQKPQARPRADGSAEFAPTLPLMIDVAAALQRSFDADELNEELLKIRRALYFDLGV PFPGIQLRFNDALPADSYNILLSEVPVSQGKLRPGAVLVRDTEQNLQALQVPYETDKRFLPNVPTLWVDAGLAPTLTAAG IPFLDPHQVLTWHLAFVLKKYSSDFIGIQETRFLLTAMEDRFPDLVKEALRVMPVQKIAEILQRLVSEDISVRNLRAVLE ALIEWGQKEKDSVLLTEYVRVSLKRHISYKYSSGQNILPAYLLAPNVEETVRGAIRQTSAGSYLALDPNASRKLVDNIKR VAGDLTAAAQKPVLLTSMDIRRYLRKMIEQDLYELPVLSYQELTQEINVQPLARVDL |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 0.0 | 59 |
YPO0266 | YP_002345347.1 | secretion system apparatus protein SsaV | Virulence | Not named | Protein | 8e-118 | 47 |
hrcV | ABA47273.1 | HrcV | Virulence | S-PAI | Protein | 2e-104 | 45 |
hrcV | YP_362156.1 | HrcV protein | Virulence | Hrp PAI | Protein | 2e-100 | 44 |
hrcV | AAT96297.1 | HrcV | Virulence | S-PAI | Protein | 7e-103 | 44 |
hrcV | AAT96337.1 | HrcV | Virulence | S-PAI | Protein | 3e-103 | 44 |
hrcV | AAT96256.1 | HrcV | Virulence | S-PAI | Protein | 2e-103 | 44 |
hrcV | AAT96139.1 | HrcV | Virulence | T-PAI | Protein | 2e-105 | 44 |
hrcV | AAT96193.1 | HrcV | Virulence | T-PAI | Protein | 1e-105 | 44 |
escV | CAI43875.1 | EscV protein | Virulence | LEE | Protein | 9e-101 | 43 |
escV | YP_003223476.1 | translocator EscV | Virulence | LEE | Protein | 1e-100 | 43 |
hrcV | BAB07859.1 | HrcV | Virulence | Hrp PAI | Protein | 1e-99 | 43 |
hrcV | YP_198723.1 | protein HrcV | Virulence | Hrp PAI | Protein | 2e-99 | 43 |
hrpI | AAA03015.1 | HrpI | Virulence | Hrp PAI | Protein | 7e-105 | 43 |
hrcV | ABQ88352.1 | HrcV | Virulence | Hrp PAI | Protein | 7e-105 | 43 |
hrcV | NP_791229.1 | type III secretion protein HrcV | Virulence | Hrp PAI | Protein | 1e-103 | 43 |
ysaV | AAS66840.1 | YsaV | Not tested | SSR-1 | Protein | 5e-99 | 43 |
invA | NP_806499.1 | virulence-associated secretory protein | Virulence | SPI-1 | Protein | 5e-100 | 43 |
invA | NP_461817.1 | needle complex export protein | Virulence | SPI-1 | Protein | 5e-100 | 43 |
hrcV | AAG33877.1 | HrcV | Virulence | Hrp PAI | Protein | 2e-103 | 43 |
invA | YP_217815.1 | invasion protein | Virulence | SPI-1 | Protein | 5e-100 | 43 |
invA | NP_457290.1 | possible secretory protein (associated with virulence) | Virulence | SPI-1 | Protein | 5e-100 | 43 |
escV | AFO66296.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 2e-99 | 43 |
escV | AFO66414.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 3e-99 | 43 |
unnamed | AAL06368.1 | EscV | Virulence | LEE | Protein | 1e-100 | 42 |
escV | AAC38382.1 | EscV | Virulence | LEE | Protein | 2e-101 | 42 |
escV | NP_290269.1 | hypothetical protein | Virulence | LEE | Protein | 1e-100 | 42 |
ECs4569 | NP_312596.1 | hypothetical protein | Virulence | LEE | Protein | 1e-100 | 42 |
escV | YP_003236089.1 | putative translocator EscV | Virulence | LEE | Protein | 6e-100 | 42 |
escV | AAC31514.1 | L0035 | Virulence | LEE | Protein | 1e-100 | 42 |
escV | ACU09459.1 | EscV protein | Virulence | LEE | Protein | 1e-100 | 42 |
hrcV | AAP34346.1 | HrcV | Virulence | Hrp PAI | Protein | 8e-87 | 42 |
XC_3013 | YP_244081.1 | HrcV protein | Virulence | Hrp PAI | Protein | 4e-89 | 42 |
hrcV | NP_636603.1 | protein HrcV | Virulence | Hrp PAI | Protein | 4e-89 | 42 |
escV | CAC81861.1 | EscV protein | Virulence | LEE II | Protein | 2e-100 | 42 |
escV | YP_003232152.1 | T3SS structure protein EscV | Virulence | LEE | Protein | 2e-100 | 42 |
escV | AAK26714.1 | EscV | Virulence | LEE | Protein | 2e-100 | 42 |
escV | AAL57541.1 | EscV | Virulence | LEE | Protein | 2e-100 | 42 |
hrcV | NP_640760.1 | HrcV protein | Virulence | Hrp PAI | Protein | 7e-87 | 42 |
ssaV | NP_456114.1 | putative type III secretion protein | Virulence | SPI-2 | Protein | 1e-98 | 42 |
ssaV | NP_805085.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 1e-98 | 42 |
ssaV | YP_216422.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 6e-99 | 42 |
ssaV | NP_460379.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 5e-99 | 42 |
ssaV | CAA70536.1 | secretion system apparatus | Virulence | SPI-2 | Protein | 4e-99 | 42 |
ECs3731 | NP_311758.1 | EivA | Not tested | LIM | Protein | 4e-103 | 42 |
invA | AAS66860.1 | InvA | Not tested | SSR-2 | Protein | 1e-90 | 42 |
hrcV | AAR25631.1 | type III secretion protein HrcV | Not tested | Not named | Protein | 2e-98 | 42 |
hrcV | AAB05999.2 | HrcV | Virulence | Hrp PAI | Protein | 3e-106 | 42 |
Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
NH44784_014751 | YP_008028570.1 | Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV | VFG0064 | Protein | 0.0 | 81 |
NH44784_014751 | YP_008028570.1 | Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV | VFG0198 | Protein | 3e-172 | 58 |
NH44784_014751 | YP_008028570.1 | Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV | VFG0384 | Protein | 0.0 | 57 |
NH44784_014751 | YP_008028570.1 | Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV | VFG2126 | Protein | 4e-135 | 47 |
NH44784_014751 | YP_008028570.1 | Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV | VFG0557 | Protein | 2e-100 | 43 |
NH44784_014751 | YP_008028570.1 | Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV | VFG0729 | Protein | 1e-101 | 42 |
NH44784_014751 | YP_008028570.1 | Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV | VFG0813 | Protein | 6e-101 | 42 |
NH44784_014751 | YP_008028570.1 | Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV | VFG0514 | Protein | 2e-99 | 42 |
NH44784_014751 | YP_008028570.1 | Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV | VFG1006 | Protein | 1e-97 | 41 |