Gene Information

Name : NH44784_014521 (NH44784_014521)
Accession : YP_008028547.1
Strain : Achromobacter xylosoxidans NH44784-1996
Genome accession: NC_021285
Putative virulence/resistance : Virulence
Product : Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1536589 - 1537389 bp
Length : 801 bp
Strand : -
Note : -

DNA sequence : 
ATGACCTCGGGCATCAACTTCGTCGAAGCGAAAGTCTTCCTGAGCACGCTGGCGCTGACGCAGCCGCGGATCCTGGCGTT
GTGCGCGATGTTGCCCCTGTTCAACCGCCAGCTGCTGCCCGGCATGCTGCGCTATGCCCTGTGCGCGGCCATCGGCTTGG
TGCTGGTGCCAGCCCTGGCGCCGCGCTACGCCGTGATTGACCTGGACGCGGTCGAGCTGGTGCTGCTGGTGGCCAAGGAA
GTCTTCATCGGCCTGGTGATGGGCTTTCTCGTGGCGATCCCGTTCTGGATCTTCGAAGCGGTGGGCTTCGTGGTCGACAA
CCAGCGCGGCGCCAGCCTGGGCGCCACCATCAACCCGGCCACGGGCAACGACTCGTCGCCGCTCGGGATCCTGTTCAACC
AGGCCTTCATGGTGTTCTTCCTGGTGGGCGGCGGCTTCATGCTGATGCTGACGATGCTGTACGACAGCTTCCGCCTGTGG
GACCTGTGGGACTGGGCGCCCACGCTGCGCCGCGAAAGCGTGCCGCTGATGCTGGACCAGCTGGGCCGCTTTCTGCGGCT
GACGCTGCTGTTCGCCGCGCCGGCCATCATCTCCATGTTCCTGGCCGAAGTGGGGCTGGCGCTGGTCAGCCGCTTCGCGC
CGCAGTTGCAGGTGTTCTTCCTGGCGATGCCGATCAAGAGCGCGCTGGCGTTGCTGGTGATGGTGCTCTACATGAGCACG
CTGTTCGAGTATGCCGCCGAGGCCACGGGCCAGATCGGTTCGGCCCTGCCGTTCCTGGACAACCAATGGCGGGCGCCATG
A

Protein sequence : 
MTSGINFVEAKVFLSTLALTQPRILALCAMLPLFNRQLLPGMLRYALCAAIGLVLVPALAPRYAVIDLDAVELVLLVAKE
VFIGLVMGFLVAIPFWIFEAVGFVVDNQRGASLGATINPATGNDSSPLGILFNQAFMVFFLVGGGFMLMLTMLYDSFRLW
DLWDWAPTLRRESVPLMLDQLGRFLRLTLLFAAPAIISMFLAEVGLALVSRFAPQLQVFFLAMPIKSALALLVMVLYMST
LFEYAAEATGQIGSALPFLDNQWRAP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscT AAO18038.1 LscT Virulence TTSS locus Protein 1e-21 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NH44784_014521 YP_008028547.1 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components VFG0042 Protein 4e-63 63
NH44784_014521 YP_008028547.1 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components VFG0396 Protein 1e-24 43