Gene Information

Name : MASS_0940 (MASS_0940)
Accession : YP_008021406.1
Strain : Mycobacterium abscessus 50594
Genome accession: NC_021282
Putative virulence/resistance : Virulence
Product : transcriptional regulatory protein PrrA
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 979305 - 980015 bp
Length : 711 bp
Strand : -
Note : -

DNA sequence :
ATGGCAGGCATGGTTGATGGGCAGGGCTCCCCGCGCGTACTGGTGGTGGACGACGACGCCGACGTGCTCGCCTCGCTGGA
ACGCGGCCTGCGCCTCTCCGGATTCGAGGTGAATACCGCCAGCGACGGCGCCGAGGCGCTGCGCTGCGCCACCGAACACC
GTCCGGACGCGATAGTGCTCGATATCAACATGCCGGTGCTGGACGGTGTCAGTGTGGTGACCGCGTTGCGCGCGATGGAC
AACGACGTACCGGTCTGTGTGCTCTCCGCACGCACCTCGGTCGACGATCGGGTCGCCGGTCTGGAGGCCGGTGCCGACGA
CTATCTGACCAAGCCGTTCGTGCTCGCCGAGTTGGTGGCCCGGGTCAAAGCGCTGCTGCGCCGCCGCGGCGCAGTAGCCA
CGTCGTCGACGGAAACCATCACCGTGGGGCCCCTGGAGGTCGAGATTCCGGGCCGGCGCGCCCGCATCAACGGTGTCGAG
GTCGATCTCACCAAACGCGAGTTCGATCTGCTGGCGGTACTGGCCGAACACAAGACCGCGGTGCTCTCACGCGCCCAGCT
GCTGGAGCTGGTGTGGGGCTACGACTTTGCCGCCGACACCAACGTCGTCGACGTGTTCATCGGTTACCTGCGCCGCAAGC
TGGAGGCCGGCGGTGCACCCCGGCTGCTGCACACCGTGCGCGGTGTCGGGTTCGTGCTGCGTTCGCAGTAG

Protein sequence :
MAGMVDGQGSPRVLVVDDDADVLASLERGLRLSGFEVNTASDGAEALRCATEHRPDAIVLDINMPVLDGVSVVTALRAMD
NDVPVCVLSARTSVDDRVAGLEAGADDYLTKPFVLAELVARVKALLRRRGAVATSSTETITVGPLEVEIPGRRARINGVE
VDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGAPRLLHTVRGVGFVLRSQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-25 41
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-24 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MASS_0940 YP_008021406.1 transcriptional regulatory protein PrrA BAC0083 Protein 5e-30 44
MASS_0940 YP_008021406.1 transcriptional regulatory protein PrrA AE000516.2.gene3505. Protein 2e-28 44
MASS_0940 YP_008021406.1 transcriptional regulatory protein PrrA NC_012469.1.7685629. Protein 1e-26 43
MASS_0940 YP_008021406.1 transcriptional regulatory protein PrrA BAC0125 Protein 2e-29 42
MASS_0940 YP_008021406.1 transcriptional regulatory protein PrrA HE999704.1.gene1528. Protein 4e-30 42
MASS_0940 YP_008021406.1 transcriptional regulatory protein PrrA BAC0197 Protein 1e-24 42
MASS_0940 YP_008021406.1 transcriptional regulatory protein PrrA NC_007793.3914065.p0 Protein 3e-32 41
MASS_0940 YP_008021406.1 transcriptional regulatory protein PrrA NC_002758.1121390.p0 Protein 3e-32 41
MASS_0940 YP_008021406.1 transcriptional regulatory protein PrrA NC_010079.5776364.p0 Protein 3e-32 41
MASS_0940 YP_008021406.1 transcriptional regulatory protein PrrA NC_002952.2859858.p0 Protein 3e-32 41
MASS_0940 YP_008021406.1 transcriptional regulatory protein PrrA NC_007622.3794948.p0 Protein 3e-32 41
MASS_0940 YP_008021406.1 transcriptional regulatory protein PrrA NC_003923.1003417.p0 Protein 3e-32 41
MASS_0940 YP_008021406.1 transcriptional regulatory protein PrrA NC_013450.8614146.p0 Protein 3e-32 41
MASS_0940 YP_008021406.1 transcriptional regulatory protein PrrA NC_002951.3238224.p0 Protein 3e-32 41
MASS_0940 YP_008021406.1 transcriptional regulatory protein PrrA NC_012469.1.7686381. Protein 7e-23 41
MASS_0940 YP_008021406.1 transcriptional regulatory protein PrrA BAC0111 Protein 1e-25 41
MASS_0940 YP_008021406.1 transcriptional regulatory protein PrrA NC_002952.2859905.p0 Protein 2e-26 41
MASS_0940 YP_008021406.1 transcriptional regulatory protein PrrA NC_007793.3914279.p0 Protein 3e-26 41
MASS_0940 YP_008021406.1 transcriptional regulatory protein PrrA NC_002745.1124361.p0 Protein 3e-26 41
MASS_0940 YP_008021406.1 transcriptional regulatory protein PrrA NC_009782.5559369.p0 Protein 3e-26 41
MASS_0940 YP_008021406.1 transcriptional regulatory protein PrrA NC_002951.3237708.p0 Protein 3e-26 41
MASS_0940 YP_008021406.1 transcriptional regulatory protein PrrA NC_003923.1003749.p0 Protein 3e-26 41
MASS_0940 YP_008021406.1 transcriptional regulatory protein PrrA NC_002758.1121668.p0 Protein 3e-26 41
MASS_0940 YP_008021406.1 transcriptional regulatory protein PrrA NC_007622.3794472.p0 Protein 2e-26 41
MASS_0940 YP_008021406.1 transcriptional regulatory protein PrrA NC_009641.5332272.p0 Protein 3e-26 41
MASS_0940 YP_008021406.1 transcriptional regulatory protein PrrA NC_013450.8614421.p0 Protein 3e-26 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MASS_0940 YP_008021406.1 transcriptional regulatory protein PrrA VFG1389 Protein 1e-81 92
MASS_0940 YP_008021406.1 transcriptional regulatory protein PrrA VFG1390 Protein 1e-41 50
MASS_0940 YP_008021406.1 transcriptional regulatory protein PrrA VFG1386 Protein 5e-36 45
MASS_0940 YP_008021406.1 transcriptional regulatory protein PrrA VFG0596 Protein 2e-25 41