Gene Information

Name : MASS_4881 (MASS_4881)
Accession : YP_008025347.1
Strain : Mycobacterium abscessus 50594
Genome accession: NC_021282
Putative virulence/resistance : Virulence
Product : TcrA protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4924791 - 4925468 bp
Length : 678 bp
Strand : -
Note : -

DNA sequence : 
GTGCGGGTGCTGCTCGTCGAAGATGAACCGCTGCTCGCCGAAACGGTGACGGCTGGCCTGAGGGCCGAAGGATTCATCGT
GGTAACTGTCAGCGACGGAATCGACGGGCTATGGCAGGCCACCAACGAAGCCTTCGACGTGATCGTCCTGGACATCATGC
TGCCGGGCCTGAGCGGCTACGAGGTCCTACGCCGAATGCGGGCCGCACACGTGTGGACCCCAGCGTTGATGCTCACCGCC
AAAGATGGCGACTACGACCAGACCGATGCCTTCGATCTGGGCGCCGATGACTATCTGACCAAACCGTTCTCGTTCATGGT
GCTCACCGCCCGCCTGCGCGCCCTGATACGCCGCGGCGCACCCAAACGTCCCGTAGTACTCACTGCCGGCGAGATCTCGC
TAGATCCCACCCGCAGGGTCGTCGAACGCGCCGGAACCCCGGTCTCGTTGACACCGCGCGAATACGGCCTACTCGAATAC
CTACTACGCAACAAAGACGCCGCAGTCACCAAAACCGATATCCTGCAAAATGTTTGGGACAATCACTATGACGGCCCCGA
CAACGTGGTCGAAGTTTATGTCGGCTACCTACGCCGCAAGATCGGCGCCCACCTGATCATCACGGTCCGCGGCGTGGGCT
ACCGGCTCGAATCAGGTGAGTACGCCGCCGACAACTGA

Protein sequence : 
MRVLLVEDEPLLAETVTAGLRAEGFIVVTVSDGIDGLWQATNEAFDVIVLDIMLPGLSGYEVLRRMRAAHVWTPALMLTA
KDGDYDQTDAFDLGADDYLTKPFSFMVLTARLRALIRRGAPKRPVVLTAGEISLDPTRRVVERAGTPVSLTPREYGLLEY
LLRNKDAAVTKTDILQNVWDNHYDGPDNVVEVYVGYLRRKIGAHLIITVRGVGYRLESGEYAADN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-35 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-34 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MASS_4881 YP_008025347.1 TcrA protein BAC0197 Protein 4e-40 45
MASS_4881 YP_008025347.1 TcrA protein BAC0083 Protein 5e-39 43
MASS_4881 YP_008025347.1 TcrA protein Y16952.3.orf35.gene. Protein 7e-29 43
MASS_4881 YP_008025347.1 TcrA protein U82965.2.orf14.gene. Protein 8e-32 43
MASS_4881 YP_008025347.1 TcrA protein BAC0638 Protein 1e-31 42
MASS_4881 YP_008025347.1 TcrA protein BAC0125 Protein 8e-37 42
MASS_4881 YP_008025347.1 TcrA protein NC_002952.2859858.p0 Protein 1e-31 41
MASS_4881 YP_008025347.1 TcrA protein NC_007622.3794948.p0 Protein 1e-31 41
MASS_4881 YP_008025347.1 TcrA protein NC_003923.1003417.p0 Protein 1e-31 41
MASS_4881 YP_008025347.1 TcrA protein NC_013450.8614146.p0 Protein 1e-31 41
MASS_4881 YP_008025347.1 TcrA protein NC_002951.3238224.p0 Protein 1e-31 41
MASS_4881 YP_008025347.1 TcrA protein NC_007793.3914065.p0 Protein 1e-31 41
MASS_4881 YP_008025347.1 TcrA protein NC_002758.1121390.p0 Protein 1e-31 41
MASS_4881 YP_008025347.1 TcrA protein NC_010079.5776364.p0 Protein 1e-31 41
MASS_4881 YP_008025347.1 TcrA protein BAC0308 Protein 2e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MASS_4881 YP_008025347.1 TcrA protein VFG1386 Protein 1e-39 45
MASS_4881 YP_008025347.1 TcrA protein VFG0596 Protein 1e-35 43
MASS_4881 YP_008025347.1 TcrA protein VFG1390 Protein 3e-36 41