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Name : lysS (MASS_2245) Accession : YP_008022711.1 Strain : Mycobacterium abscessus 50594 Genome accession: NC_021282 Putative virulence/resistance : Unknown Product : lysine--tRNA ligase Function : - COG functional category : - COG ID : - EC number : - Position : 2307753 - 2311085 bp Length : 3333 bp Strand : - Note : - DNA sequence : GTGACATCCATCAAACCGGCAGTTGAACCACCCGCCCCGGATCATTCCGCTGTCACGGTGCTTCCGGGAATCGGTGCACG CCCGGCAGCGCGACCACCCGTGACCTCACGGTGGCGCTGGGTCCCGGCGTTCTTCGGCTGGTTTGTCGGCATCCAGGCGA TCCTGAACTTCCTGTCGAGCATTTCGCCATTCATTCGGATGGTGACGAAGCTGCCTCGCGAGTTCGTCGACGAATATCTG TTCGGTTGGCCCGACGGCAGCCTGTCCTGGGCTTTTGTGCTGTCGCTACTGGCCGCCGCCCTGGCGGTGCGCAAGAGCAT CGCCTGGTGGGTGCTCTTGATCGACCTACTGGGACGGTCAGCACTGAACGTGGGCGGCTTCATAGAGCATCGCGATACCA CCGAGCTGATCGGTCTCGTCGTGCACGGCGCGTTCATCCTGTTGCTGCTGCTCGCGCGTAAGGAGTTCTACGCCAAGGTA CGGCGCGGCGCGACGGTCAAGGCGGCGCTGGTGCTGATCGCGGGGATGGCCGCCGGGACAGTCCTGGCATGGGGCCTGCT GGAGCTCTTTCCCCGCACGCTTGTCCCCGGTGATCGTTTCTGGTGGGCACTCAATCGGGTGGCCGGCTTTTCGATCGCCT CACACCGCGATTTCGACGGTCTGCCCCCTCACTTCCTGAACTGGCTCTTCGGGCTATTCGGCGCGCTGGCCCTGATCGCC GCGGCCATCGTGTTGTTCCGCTCGCAACGAGCCGTCAACGCGCTGACCGGTGATGACGAATCTCTGATCCGCGGACTCCT GGAGCGTTATGGGCAGGACGACTCCCTGGGGTATTTCGCGACGAGACGCGACAAGGCGGTCATCTTCGCACCCAATGGCC GAGCGGCTGTGACATATCGGGTGGAAGTCGGCGTCTGTCTGGTCAGTGCCGATCCCATTGGGGACAAATCGGCTTGGGGC CAAGCTATTTCCGCATGGCTGCAGGTGTGCGACGCGTACGGCTGGGCGCCGGCGGTCATGGGCGCCAGCGCCGAAGGTGC GCTGGCGTATCGCGAGCATGGGCTCAACGCACTGGAACTCGGCGACGAGGCCATCCTGTACCCGCGCTCATTCTCGATTT CGGGCCCGCACATGGCCGCGGTCCGGCAGGCGGTCAACCGCGCCCGACGTTCGGGACTCTCGGTGCGTATCCGCCGCCAT CGCGAACTGAGCGCCGAAGACACGAAACAGATCATCGTCAATGCCGACCTGTGGCGTGATGGCAATACCGAGCGCGGCTT CTCGATGGCGCTGGGACGGTTGGGGGATTCCACCGACGGCGACTGCCTGTTGGTTGAGGCGATCGATTCCACGGGCGATC CCGTCGCCATGCTGTCTCTCGTACCTTGGGGCACTAACGGGGTGTCCCTCGAGCTCATGCGCCGCTCGCGTCAATCACCC AACGGCACTATCGAATTCATGGTCACGGAGCTGCTCACACGCGCAGAGGGCATGGGGATCACCCGCGTTTCCCTCAACTT TGTGATGTTCCGCTCGGTCTACGCCGACGGCTCCCGAATCGGAGCGGGCCCGGTGCTACGACTGTGGCGCTCGGTGCTGA TGTTCGCCTCACGGTTCTGGCAGTTCGAGCAGTTGTATCGCTCCAATGTGAAGTATCAGCCGGAATGGGTGCCCCGGTTC GCCTGCTACGAGGACGCCCGGCTCATCCCCCGCATCGGCATCGCGTCGGTGATCGCCGAAGGCTTCCTGGTGCTGCCCTT CGGCAACCGCGACAAGCCGAGGCACACCGGCCAGTACAGCGCGGTTCCGCAGGCCATCGTGGCCACGGGCCTGCTGCATC ACGATGGCAGCACACCCGAGCTACTGCCCCAAACGGCACCTCAACAGCGCGTACCGGAGCAGGTCAAGGTTCGACTGGGC AAGCTGGCTGCCTTACAGGAGAAGGGAATCGACGCGTACCCGGTGGGATCGCCACCGTCCCATACCGTCGCCGAGGCCCT TGCCGCACCCGACGGTAGCGAAGTGGTGATCAGCGGGCGCTTGTTGCGAATCCGCGACTACGGCGGTGTGTTGTTCGCAC AGCTACGGGATTGGTCCGCAGAGGTGCAGCTGCTTATCGACGATCCGCGGCTACACGAAGAGTTCACCGCCGCCGTCGAT CTGGGTGACCTGGTCGAGGCCAGCGGGGTCATGGGTCAATCGAACAACGGCACCCGATCAGTCTTGGTGAAGTCGTGGCG GATCATCGGCAAATGCCTGCACCCGCTCCCCGATAAGCGTAAGGGCCTTACCGACCCCGAAGCCAGGGTGCGTGCACGAT ACCTCGACCTGGCGATCAACCCCGAGGCTCGCGAGCAGATCGCGGCCCGTAGCGCGATCATCACATCGCTGCGCAATACC CTTTTGGCTCAAGACTTCCTAGAGGTGGAAACACCAATCCTGCAGCAGGTGCACGGCGGAGCCAACGCGCGTCCCTTCCT GACGCACATCAACGCGTACAACCTGGATCTGTATCTGCGTATCGCCCCGGAGCTGTACCTCAAGCGGCTCTGCGTCGGTG GCGTGGAGAAGGTCTTCGAATTGGGCCGGGCCTTCCGCAACGAGGGCGTGGACTTCAGCCATAATCCCGAATTCACCCTG CTCGAGGCCTATCAGGCACACGCCGACTATGTGACTTGGGCCAAGACCACACAGCGGCTCATCCAGAACGCCGCGAAAGC CGCCCACGGGGCCGAAGTAGTGATGCGGCCCGGTGTCGACGGGAGGCTGGCACCGGTGGACATCGGTGGCGAATGGCCAA TCGTCCCGGTGCATGAGGCGGTCTCTCACGCGCTGGGTGAAGAGGTCAACGCTGCGACGGAAGTGCCGGCACTGCGAAGG TTCTGCCAGTCCGCGGAGGTGCAGTTCAATCCGCGCTGGGATGCCGGCCACCTGGTCCTGGAACTCTACGAACGGCTGGT GGAGAAACACACGACCTCACCCACGTTCTATAGCGATTTCCCGGTCTCGGTATCGCCGCTTACCCGCCCGCACCGCAGCA TCACCGGGCTCGCCGAGCGCTGGGACCTGGTCGCGTGGGGTGTCGAACTCGGCACCGCCTATACCGAGCTGACCGACCCG GTGGAACAGCGCCGACGCCTGTATGAGCAATCACTGCTGGCGGCCGGCGGAGACGCCGAAGCGATGGAACTCGACGAGGA TTTCCTGCGCGCGATGGAGTACGCAATGGCGCCGACCGGCGGGATGGGCATGGGAGTGGACCGGGTGGTCATGCTGATCA CCGGGCGCAGCATCCGCGAAACACTGCCCTTCCCGCTGGCCAAGCCCCGCTAG Protein sequence : MTSIKPAVEPPAPDHSAVTVLPGIGARPAARPPVTSRWRWVPAFFGWFVGIQAILNFLSSISPFIRMVTKLPREFVDEYL FGWPDGSLSWAFVLSLLAAALAVRKSIAWWVLLIDLLGRSALNVGGFIEHRDTTELIGLVVHGAFILLLLLARKEFYAKV RRGATVKAALVLIAGMAAGTVLAWGLLELFPRTLVPGDRFWWALNRVAGFSIASHRDFDGLPPHFLNWLFGLFGALALIA AAIVLFRSQRAVNALTGDDESLIRGLLERYGQDDSLGYFATRRDKAVIFAPNGRAAVTYRVEVGVCLVSADPIGDKSAWG QAISAWLQVCDAYGWAPAVMGASAEGALAYREHGLNALELGDEAILYPRSFSISGPHMAAVRQAVNRARRSGLSVRIRRH RELSAEDTKQIIVNADLWRDGNTERGFSMALGRLGDSTDGDCLLVEAIDSTGDPVAMLSLVPWGTNGVSLELMRRSRQSP NGTIEFMVTELLTRAEGMGITRVSLNFVMFRSVYADGSRIGAGPVLRLWRSVLMFASRFWQFEQLYRSNVKYQPEWVPRF ACYEDARLIPRIGIASVIAEGFLVLPFGNRDKPRHTGQYSAVPQAIVATGLLHHDGSTPELLPQTAPQQRVPEQVKVRLG KLAALQEKGIDAYPVGSPPSHTVAEALAAPDGSEVVISGRLLRIRDYGGVLFAQLRDWSAEVQLLIDDPRLHEEFTAAVD LGDLVEASGVMGQSNNGTRSVLVKSWRIIGKCLHPLPDKRKGLTDPEARVRARYLDLAINPEAREQIAARSAIITSLRNT LLAQDFLEVETPILQQVHGGANARPFLTHINAYNLDLYLRIAPELYLKRLCVGGVEKVFELGRAFRNEGVDFSHNPEFTL LEAYQAHADYVTWAKTTQRLIQNAAKAAHGAEVVMRPGVDGRLAPVDIGGEWPIVPVHEAVSHALGEEVNAATEVPALRR FCQSAEVQFNPRWDAGHLVLELYERLVEKHTTSPTFYSDFPVSVSPLTRPHRSITGLAERWDLVAWGVELGTAYTELTDP VEQRRRLYEQSLLAAGGDAEAMELDEDFLRAMEYAMAPTGGMGMGVDRVVMLITGRSIRETLPFPLAKPR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lysS1 | YP_005682181.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 3e-145 | 41 |
| lysS1 | YP_005684273.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 2e-145 | 41 |
| lysX | YP_003784331.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 2e-145 | 41 |
| lysS1 | YP_005686365.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 2e-145 | 41 |
