Gene Information

Name : HMPREF0409_00476 (HMPREF0409_00476)
Accession : YP_008019598.1
Strain : Fusobacterium sp. 4_8
Genome accession: NC_021281
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1294480 - 1295163 bp
Length : 684 bp
Strand : +
Note : -

DNA sequence : 
ATGAATGCTATTGAAATTAAAAATTTAACAGTTGCTTATGGAGAAAATATAGCATTAGAAGATTTTAATTTAGATGTAGA
GATAGGAAGTTTAATGGCACTTGTTGGTCCAAATGGAGCAGGAAAATCAACTCTTATCAAAACAATATTAAAATTTTTAA
AACAAATAACTGGTGAAATAAAGATAAGTAAAAAAAGTTTAGCCTATGTGCCACAAAGAAACAGTGTTGATTGGGATTTC
CCAACAACACTATTTGATGTAGTTGAAATGGGGTGTTATGGCAGAGTTGGACTTTTTAAAAGAGTTAATAAAGAAGAAAA
AGTGAAAGTTTTAAAAGCAATAGAACAAGTTGGTATGTTAGACTTTAAAGATAGGCAAATATCAGAGCTTTCAGGTGGAC
AACAACAGAGGACTTTTATTGCAAGAGCCTTGGTGCAAGAAGCAGATATTTACCTTATGGATGAGCCTTTTCAAGGCGTC
GACTCAACAACAGAAAAGTCAATAGTAGATATATTAAAAAAGTTAAAATCAGATGGTAAGACTTTACTTGTTGTACATCA
TGATTTACAAACTGTACCAACTTATTTTGAATCTGTTACTTTTATAAATAAAACTGTTATTGCTAGTGGAAAAGTAAAGG
AAGTTTTTACACAAGAAAATATAGATAAAACATATAGAAAATAA

Protein sequence : 
MNAIEIKNLTVAYGENIALEDFNLDVEIGSLMALVGPNGAGKSTLIKTILKFLKQITGEIKISKKSLAYVPQRNSVDWDF
PTTLFDVVEMGCYGRVGLFKRVNKEEKVKVLKAIEQVGMLDFKDRQISELSGGQQQRTFIARALVQEADIYLMDEPFQGV
DSTTEKSIVDILKKLKSDGKTLLVVHHDLQTVPTYFESVTFINKTVIASGKVKEVFTQENIDKTYRK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 1e-44 44
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 7e-45 44
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 2e-42 42
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 1e-42 42
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 6e-42 42
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 6e-42 42
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-42 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF0409_00476 YP_008019598.1 hypothetical protein BAC0400 Protein 4e-59 55
HMPREF0409_00476 YP_008019598.1 hypothetical protein BAC0440 Protein 6e-44 43
HMPREF0409_00476 YP_008019598.1 hypothetical protein BAC0350 Protein 7e-43 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF0409_00476 YP_008019598.1 hypothetical protein VFG0526 Protein 7e-43 42