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Name : lysS (AORI_1207) Accession : YP_008010199.1 Strain : Amycolatopsis orientalis HCCB10007 Genome accession: NC_021252 Putative virulence/resistance : Unknown Product : lysyl-tRNA synthetase, class II Function : - COG functional category : - COG ID : - EC number : - Position : 1225640 - 1228945 bp Length : 3306 bp Strand : + Note : - DNA sequence : GTGGGCCGAGTCGCGCCGTGGAAGGCGAGGGCGGGCGGGATCGTCGCCACCCTCGTGCAGCTCGCGGCCGTGTTCTCGGT GATCCTCCTGCTCGCCGGCGGCGTGAAGGGGCCGGTGCTCAGGACGGGTGACATCGCCTTCTCGGCCTTGAGCATCCCGA CGAACGCGAGCCTCGTGATCGTCCTGCTGCTCGTCGTCCTCGGCGCCGCGCTCCGCCGCCGCAAACGCGCGGCCCTCTAC ACGCTCCTGCTGTTCCAGGTCGGCGGCCTGGCGGTGACGCTGGCCTTCCAGGCCGCCCTGCTGTGGTCACCCGAGCTGTT GAAACTGGGCCCGTGGCAGGTTCGGCACATTCCACACCAGGTGTGGGTGCTGGCCATCGCCGACCTGATCTCGATCGGGA TGATCGCGTTCCTCTGGATCCTGCGGCCCGCGTTCCCCGCCCGGCTCGCGCCCGGAGCCTGGCGCGACGGTCTCACGGTG CTCTTCGGCGGCCTGGCCGCGGTCATCCTCGTCGGCTGGGGCTTGAGCGAAGCCTTCCCCGGCCGTCTCGCCGATACCTG GGCGCGGTTCGCCTGGGTCGTCAACCACACGACCGGAGAGAACATCCAGCTGCGCCGGGTCGGGATCGGCGAGGGGCCCG CGTGGCTCGACCTCGTGCTCGACCTCAGCGCGACGGCCGTCGCGACGGCCGCGCTGTACACGCTCTTCCGCGGGGTGCGC AGCCGTCGCTTGAGGACAGACGAGGAAGAACTGCGCGTACGCCGTCTTCTGGCCGAACACGGCGAAGACGACTCTCTCGG CTATTTCGCCACCAGGCGCGAGAAGAGCGTCGTCTTCTCGCCGAACGGCCGCGCCGCCGTGGCCTACCGCGTGCTCGCGG GCACCAGCGTCGCCAGCGCGGATCCCATCGGCGATCCCGACGCCTGGCCCGACGCGGTCCGCGCCTGGCTGAACGAGGCA CGCACCTACGGTTGGACGCCCGGCGTGCTCGGCGCGAGCGAACGCGGCGCGAAGGTCTACGCCGACGCGGGTCTGCGCGC GCTGGAAATCGGCGACGAAGCCGTCCTCGACGTCCGCGACTTCAGCCTCGCCGGGCCGGAACGTCGTTCGGTCCGGCAAG CGGTCAAACGGATCGAACGGGCCGGATACAGCACGAAAGTCCGGCGGCACAGCGAAATCCCGGCCGACGAAATGGCCGGG CTGTTGCTGCACGCGCAGCAGTGGCGCGGCGCGGAGACCGAGCGCGGGTTCTCGATGGCGCTCGGCAGGCTCGGTGATCC GAGCGACGGTCGCAGCGTGATGGTGGAGGCGTACGACGCCAAGGGCGAGCTTCGCGGCATGCTGTCGTTCGTGCCGTGGG GCCGTCGCGGCCTGTCGCTCGACCTGATGCGGCGCGACCGCGACGCCGAGAACGGGCTCAACGAGTACATGGTCGCCGAG GTCGTCGCGGCGAGTTCCCACCTTGGCGCGCAACGGATTTCGCTGAACTTCGCGATGTTCCGCGCGGTCTTCTCCGAGGG GGAGCGGATCGGCGCGGGCCCGGTGCTGCGCGCCTGGCGCGGCGTGCTCAGCATGGCGTCGCGGTTCTTCCAGCTGGAAT CGCTTTACCGGTCCAACGCCAAGTACGGGCCCGACTGGGAGCCGCGTTTCCTGTGCTATTCCTCGGCTCGACGGTTGCCG CGGGTCGGCATCGTCGCCGGCGCGCTCGAAGGTTTCGTCCCGACAGGACGATCGGGGCGGGCGCTCAAACTGGAGACGGT CACCGAGGAATTCGTCGTCGAAGTCCACCGCATCGAAGCGAACGCGGCCACTCCCGCGCCGAAACCGGTGCGACGCCCCG ACCAGGTCCGGGTGCGGATGGCGAAGCTGGACCGCTTGCGGGAAGCCGGAATCGACCCCTACCCGGTCGGTTTCGCCCGG GAGGATCTGCTCGGCGACGTCGTTTCGAAGTTCGGCGATCTGAGCCCGGACACCCACACCGGTCATCGGGTCCGCGTCGC GGGCCGGGTGCTCGCGATGCGTAACCTCGGTGGGCTCTGTTTCGCGCGGATCAAGGATTTCAGCGGCGAGATCCAGCTGA TGCTCGACGCCTCCGTGCTCGACCTCGGCGGCTGGCGGCGAGGCATCGACCTAGGTGACCATGTCGGCGTGAGCGGGCAG GTCGTGACGTCGCGGCGCGGTGAGCTTTCCGTGCTCGTCGACGAATGGACCGTGACGGCGAAGAGTCTGCATCCGTTGCC GGACAAGCGAAAAGGCCTCACCGACCCGGAGACGCGGGTGCGGCAGCGGTACCTGGACCTCGCGGTGAACCCGGACTCGA CGGCGATGCTGCGGATGCGCTCGACCGTCGTGCGCGCGGTGCGGGAGCGGTTGCACCAGGGCGACTACCTCGAAGTCGAG ACGCCGATGCTGCAGACCGTGCACGGCGGCGCCAACGCGCGCCCGTTCATCACGCATATCAACGCCTACGACATGCGGAT GTATCTGCGGATCGCGCCCGAGCTCTACCTGAAGCGGCTTTGCGTGGCGGGCGTCGAGCGCGTTTTCGAGCTGAACCGGA ACTTCCGCAACGAGGGTGTCGACGCGACGCACAACCCCGAATTCACCATGCTGGAGGCATATCAGGCGTATGCCGACTAC AACACCATGCGGACCTTGACGCGCGAACTCGTGCAGTGCGCCGCGGAGGCCGCGTACGGCGCGCAGGTGGTTCGCCGCCC GGGGCCGGACGGGAAGGTCGTCGAGTACGACATCTCCGGTGACTGGCCGGTGATCCCGGTGCACGAAGCCGTCTCGGCGG CGCTCGGGGAGAAGATCGACGCGAGCACTTCCGTCGCCGAACTCCAGCGGCTGTGCCGCGCGGCCGGGGTGCCGGTGAAC GAGGACGCCGGGCACGGCGATCTCGTGCTGAAGGCGCACGAGCATCTGGTCGAAGGCGCGACGGTGCTGCCGACCTTCTA CACCGACTACCCGACCGACGTCTCGCCGCTGACCCGGCAACATCGCGTGGACCCGCGGCTGGCCGAGCGCTGGGACCTGA TCGCGTTCGGCTCCGAGGTCGGCACGGCCTACACCGAGCTGACCGACCCGCTCGAGCAGCGACGGCGGCTGGAGGCCCAG TCGCTGCGCGCCGCGAGCGGAGACGTCGAGGCGATGGAGCTGGACGAGGACTTCCTGCTCGCGCTCGAACACGGCATGCC GCCGACCGGTGGGCTCGGCATCGGCGTCGACCGGCTGCTGATGATGCTGACCGGGGCGTCGATCCGGCAGACGGTGCTGT TCCCGTTCGTGCGTCCGCAGGGGTAA Protein sequence : MGRVAPWKARAGGIVATLVQLAAVFSVILLLAGGVKGPVLRTGDIAFSALSIPTNASLVIVLLLVVLGAALRRRKRAALY TLLLFQVGGLAVTLAFQAALLWSPELLKLGPWQVRHIPHQVWVLAIADLISIGMIAFLWILRPAFPARLAPGAWRDGLTV LFGGLAAVILVGWGLSEAFPGRLADTWARFAWVVNHTTGENIQLRRVGIGEGPAWLDLVLDLSATAVATAALYTLFRGVR SRRLRTDEEELRVRRLLAEHGEDDSLGYFATRREKSVVFSPNGRAAVAYRVLAGTSVASADPIGDPDAWPDAVRAWLNEA RTYGWTPGVLGASERGAKVYADAGLRALEIGDEAVLDVRDFSLAGPERRSVRQAVKRIERAGYSTKVRRHSEIPADEMAG LLLHAQQWRGAETERGFSMALGRLGDPSDGRSVMVEAYDAKGELRGMLSFVPWGRRGLSLDLMRRDRDAENGLNEYMVAE VVAASSHLGAQRISLNFAMFRAVFSEGERIGAGPVLRAWRGVLSMASRFFQLESLYRSNAKYGPDWEPRFLCYSSARRLP RVGIVAGALEGFVPTGRSGRALKLETVTEEFVVEVHRIEANAATPAPKPVRRPDQVRVRMAKLDRLREAGIDPYPVGFAR EDLLGDVVSKFGDLSPDTHTGHRVRVAGRVLAMRNLGGLCFARIKDFSGEIQLMLDASVLDLGGWRRGIDLGDHVGVSGQ VVTSRRGELSVLVDEWTVTAKSLHPLPDKRKGLTDPETRVRQRYLDLAVNPDSTAMLRMRSTVVRAVRERLHQGDYLEVE TPMLQTVHGGANARPFITHINAYDMRMYLRIAPELYLKRLCVAGVERVFELNRNFRNEGVDATHNPEFTMLEAYQAYADY NTMRTLTRELVQCAAEAAYGAQVVRRPGPDGKVVEYDISGDWPVIPVHEAVSAALGEKIDASTSVAELQRLCRAAGVPVN EDAGHGDLVLKAHEHLVEGATVLPTFYTDYPTDVSPLTRQHRVDPRLAERWDLIAFGSEVGTAYTELTDPLEQRRRLEAQ SLRAASGDVEAMELDEDFLLALEHGMPPTGGLGIGVDRLLMMLTGASIRQTVLFPFVRPQG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lysS1 | YP_005684273.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 4e-166 | 46 |
| lysX | YP_003784331.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 4e-166 | 46 |
| lysS1 | YP_005686365.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 4e-166 | 46 |
| lysS1 | YP_005682181.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 4e-166 | 46 |
