Gene Information

Name : PFLCHA0_c60470 (PFLCHA0_c60470)
Accession : YP_008003279.1
Strain : Pseudomonas fluorescens CHA0
Genome accession: NC_021237
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 6708247 - 6709740 bp
Length : 1494 bp
Strand : +
Note : -

DNA sequence :
ATGACCGAATTGATGCGTGACAATCAGGCGCAACCCGGCGCCACCGAGCAGGCCAGCGAATTCGCATCGCTGCTGCTGCA
GGAATTCAAGCCCAAGACCGAGCGTGCTCGCGAAGCCGTGGAAACCGCGGTGCGGACCCTGGCCGAACAGGCCCTGGCGC
AGACCGACCTGGTGTCCAACGACGCCATCAAGTCGATCGAGTCGATCATCGCCGCCATCGACGCCAAGCTCACCGCCCAG
GTCAACCAGGTGATCCATCACCCGGAATTCCAGAAGCTGGAAAGCGCCTGGCGCGGCCTGCACTACCTGGTGAACAACAC
CGAGACCGACGAGCAGCTCAAGATCCGCGTGCTCAACATCTCCAAGCCGGAGCTGCACAAGACCCTGAAGAAATTCAAGG
GCACGGCCTGGGACCAGAGCCCGCTCTTCAAGAAGATGTACGAAGAGGAATACGGCCAGTTCGGCGGCGAGCCTTACGGC
TGCCTGGTGGGCGACTACTACTTCGACCAGTCGCCACCGGATGTCGAGCTGCTGGGCGAGCTGTCCAAGGTTTGCGCCGC
CATGCACTCGCCGTTCATCGCCGCGGCTTCGCCGACCGTGATGGGCATGGGCTCGTGGCAGGAACTGTCGAACCCGCGCG
ACCTGACCAAGATCTTCACCACCCCGGAATACGCCGGCTGGCGCTCGTTGCGTGAATCGGAAGACTCGCGCTACATCGGC
CTGACCATGCCGCGCTTCCTGGCGCGCCTGCCATACGGCGCCAAGACCGACCCGGTGGAAGCCTTCGCCTTCGAGGAAAA
CACCGACGGCGCCGACAGCTCCAAGTACACCTGGGCCAACGCCGCCTACGCCATGGCCGTGAACATCAACCGTTCGTTCA
AGCATTTCGGCTGGTGCTCGCGGATCCGCGGCGTGGAGTCCGGCGGCGAGGTGGAAAACCTCCCGGCCCACACCTTCCCC
ACCGACGACGGTGGCGTGGACATGAAGTGCCCGACCGAGATCGCCATCTCCGACCGTCGTGAAGCGGAACTGGCGAAGAA
CGGCTTCATGCCACTGCTGCACAAGAAGAACACCGACTTCGCCGCCTTCATCGGCGCCCAGTCGCTGCAGAAGCCGGCCG
AATACGACGACCCGGACGCCACCGCCAACGCCAACCTGGCCGCGCGCCTGCCGTACCTGTTCGCCACTTGCCGCTTCGCT
CACTACTTGAAGTGCATCGTGCGCGACAAGATCGGCTCCTTCAAAGAGAAGGACGAGATGCAGCGCTGGTTGCAGGACTG
GATCCTCAACTACGTCGACGGTGATCCGGCGCACTCCACCGAAACCACCAAGGCCCAGCACCCACTGGCCGCGGCGGAAG
TGGTGGTCGAGGAAGTCGAAGGCAACCCCGGCTACTACAACTCGAAGTTCTTCCTGCGCCCGCACTACCAGCTCGAAGGG
CTGACCGTGTCGTTGCGCCTGGTATCCAAACTGCCGTCCGCCAAGGGCGCCTAA

Protein sequence :
MTELMRDNQAQPGATEQASEFASLLLQEFKPKTERAREAVETAVRTLAEQALAQTDLVSNDAIKSIESIIAAIDAKLTAQ
VNQVIHHPEFQKLESAWRGLHYLVNNTETDEQLKIRVLNISKPELHKTLKKFKGTAWDQSPLFKKMYEEEYGQFGGEPYG
CLVGDYYFDQSPPDVELLGELSKVCAAMHSPFIAAASPTVMGMGSWQELSNPRDLTKIFTTPEYAGWRSLRESEDSRYIG
LTMPRFLARLPYGAKTDPVEAFAFEENTDGADSSKYTWANAAYAMAVNINRSFKHFGWCSRIRGVESGGEVENLPAHTFP
TDDGGVDMKCPTEIAISDRREAELAKNGFMPLLHKKNTDFAAFIGAQSLQKPAEYDDPDATANANLAARLPYLFATCRFA
HYLKCIVRDKIGSFKEKDEMQRWLQDWILNYVDGDPAHSTETTKAQHPLAAAEVVVEEVEGNPGYYNSKFFLRPHYQLEG
LTVSLRLVSKLPSAKGA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec18 YP_851426.1 hypothetical protein Not tested PAI II APEC-O1 Protein 1e-80 41
aec18 AAQ96712.1 Aec18 Not tested AGI-1 Protein 1e-80 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PFLCHA0_c60470 YP_008003279.1 hypothetical protein VFG2070 Protein 0.0 93
PFLCHA0_c60470 YP_008003279.1 hypothetical protein VFG2093 Protein 1e-84 42
PFLCHA0_c60470 YP_008003279.1 hypothetical protein VFG2475 Protein 2e-84 42