Gene Information

Name : pilR (PFLCHA0_c52830)
Accession : YP_008002525.1
Strain : Pseudomonas fluorescens CHA0
Genome accession: NC_021237
Putative virulence/resistance : Virulence
Product : type 4 fimbriae expression regulatory protein PilR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5895080 - 5896432 bp
Length : 1353 bp
Strand : +
Note : -

DNA sequence : 
ATGAAAACTGCAGCCGCCATGAACCCACGGCAATCGGTGCTGGTGGTCGATGACGCCACGGAAACCCGCGCCCTTGTGGA
GATCACTCTGGGCCGAATGCGCTTGCACACCCAAAGTGCGCGCACCCTGCAGGAAGCCCGTGGCCGCCTGGCCCGGGAGC
GCTTTGACCTGTGCCTGACCGACCTGCAGCTACCGGACGGCAGCGGGCTGGAGCTGCTGCGGCACATCCGCCAGTCCCAC
CCCAACCTTCCTGTGGCGCTGCTAAGCAACGGCGCCTGTGCACAGGCCAGCGCGGGCGCCCTGCAGGCCGGAGCCTGCCA
GTTGCTGCACAAGCCTCTGGACCTCAAGCAACTGCGCGCTTGGGTAGGTGCCAGCCTGAAGCAGGCCACGGACTGCGCAA
CGGATGACCCAGCCCGGCAATTGCTGGGAGACTCGGCGCCCATGAATGCCCTGCGTCGCCACATCGACAAGCTGGCCCAC
AGCCTGGCGGCGGTCTATATCAGCGGTGAATCCGGCAGTGGCAAGGAACGGGTCGCCCGCCTGCTCCACCAGCTTGGCCC
CAGGGCCCGATACCCGTTCGTCCCGGTCAACTGCGGGGCGATTCCTTCCGAATTGATGGAGAGTGAACTCTTCGGCCATT
GCAAAGGCAGCTTCAGTGGCGCCGTCAGCGATCAGCCCGGGTTATTTCTAGCCGCCCACGGCGGCACCCTGTTTCTTGAT
GAGGTCGCCGACCTGCCCCTGGCCATGCAAGTAAAACTGCTGCGAGCCTTGCAGGAAAAATCCGTGCGCCCTGTAGGCAG
CCAACAGGAAAAAACCGTCGACGTGCGGATTCTCTGTGCCACCCACAAGGACCTGAAAAACGAGGTAGAGACCGGACGCT
TTCGCCAGGACCTCTACTACCGCCTGAACGTCATCGAGTTGCGAGTCCCTGCGTTGCGCGAGCGCCGTGGCGACATCCCC
GCACTGGCCGGGCACGTCCTGCAGCGCCTGGCCAGGGACAGCGGACAGCCTGCCGTCCAGCTACGTCCCGAAGCCCTGCA
AGCCCTGGAGCGCTATGACTTTCCGGGCAACGTGCGAGAGCTGGAAAACCTGCTGGAACGGGCGCAGACCCTATGCGAAG
GACGCTGGATAGAAACAGACGACCTGCAGTTGCCCAGAGCCGACAGCCTTGAAGCCCGATCATCGGCGGCGGCCACCCAG
CTAGACCTGGCGCTGCACCTGCAACAGGTGGAGCGCCAGCTGCTGCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCAC
GGCGGCGGCCCGGCGGCTGAGCCTGTCGTTTCGTTCGATGCGTTACCGCATGAAGAAGCTCGGGCTGGACTAG

Protein sequence : 
MKTAAAMNPRQSVLVVDDATETRALVEITLGRMRLHTQSARTLQEARGRLARERFDLCLTDLQLPDGSGLELLRHIRQSH
PNLPVALLSNGACAQASAGALQAGACQLLHKPLDLKQLRAWVGASLKQATDCATDDPARQLLGDSAPMNALRRHIDKLAH
SLAAVYISGESGSGKERVARLLHQLGPRARYPFVPVNCGAIPSELMESELFGHCKGSFSGAVSDQPGLFLAAHGGTLFLD
EVADLPLAMQVKLLRALQEKSVRPVGSQQEKTVDVRILCATHKDLKNEVETGRFRQDLYYRLNVIELRVPALRERRGDIP
ALAGHVLQRLARDSGQPAVQLRPEALQALERYDFPGNVRELENLLERAQTLCEGRWIETDDLQLPRADSLEARSSAAATQ
LDLALHLQQVERQLLLQALEETRWNRTAAARRLSLSFRSMRYRMKKLGLD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-87 45
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-87 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pilR YP_008002525.1 type 4 fimbriae expression regulatory protein PilR BAC0089 Protein 9e-69 44
pilR YP_008002525.1 type 4 fimbriae expression regulatory protein PilR BAC0467 Protein 6e-66 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pilR YP_008002525.1 type 4 fimbriae expression regulatory protein PilR VFG1214 Protein 5e-128 63