Gene Information

Name : PFLCHA0_c51050 (PFLCHA0_c51050)
Accession : YP_008002358.1
Strain : Pseudomonas fluorescens CHA0
Genome accession: NC_021237
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5710834 - 5711784 bp
Length : 951 bp
Strand : +
Note : -

DNA sequence : 
ATGTCCGCCAAGCCGAAAATTGCCATCAGCGCCTGCCTGATGGGTGTGGAAGTCCGCTACAACGGTGGACACAAAGAGTC
CCGGCTGTGCAGCCGAGTCCTCACCGAACACTTCGACTTCGTGCCCCTGTGCCCGGAAGTCGCCATCGGCATGGGCACCC
CCCGCGAACCTATCCGACTGGTCGGCGACCCCGAGCAGCCGCGGGCCGTGGGCACCGTGGACCCCAGCCTGGACGTCACT
CTGCCCCTGGCCGAATATGGCGAGCGCATGGCGGCCGAGGTCGATGACATCTGCGGCTACATCTTCATGCAGAACTCGCC
CTCCTGCGGCCTGGAGCGAGTCAAGGTGTACCAGGCCAACGGCATTCCCCATCGCAACGGCGGTCGCGGCATCTATGCCC
AGGCGTTCTGTCAGAAACATCCCGATCTGCCAGTGGAAGAAGCCGGGCGCCTGAACGATCCGGTGCTGCGGGAAAACTTC
CTGACTCGGGTCTACGTCTATCGCGACTGGCAGGCGCTGCTCAAGCAAGGCCTGACTCGCCGCGCCCTCACGGACTTCCA
CTCGCGCTGCAAATACCTGCTGATGGCCCATCACCCGGTGCAGTACAAGACCCTGGGCAATCTGCTGGGCAGCATGGGCA
AGAGCGATCCGAGCCTGATCGGCCCGCGCTATTTCAGCGAGCTGATGGCGGCGCTGAGCAAATGCGCGACCCGCGGCACC
CACAGCAATGTGCTGCAGCACCTGAGCGGCTACCTCAAGCAAGCCATCAGCAGCGCGGACAAGCAGGAAGTGCAGCATGT
CATTGGTCAGTACCGTCACGGCATCGTGCCTCTGGTGGTGCCCCTGACCCTACTCAAGCACCACTTCCGCCAGCACCCCG
ATCCCTACATCGCCCAGCAGTTGTATTTGCAACCGCACCCGGAAAACCTCAGCCTGCGCAACGCGATCTGA

Protein sequence : 
MSAKPKIAISACLMGVEVRYNGGHKESRLCSRVLTEHFDFVPLCPEVAIGMGTPREPIRLVGDPEQPRAVGTVDPSLDVT
LPLAEYGERMAAEVDDICGYIFMQNSPSCGLERVKVYQANGIPHRNGGRGIYAQAFCQKHPDLPVEEAGRLNDPVLRENF
LTRVYVYRDWQALLKQGLTRRALTDFHSRCKYLLMAHHPVQYKTLGNLLGSMGKSDPSLIGPRYFSELMAALSKCATRGT
HSNVLQHLSGYLKQAISSADKQEVQHVIGQYRHGIVPLVVPLTLLKHHFRQHPDPYIAQQLYLQPHPENLSLRNAI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orf319 NP_460354.1 inner membrane protein Not tested SPI-2 Protein 2e-60 41
STY1731 NP_456139.1 putative pathogenicity island protein Not tested SPI-2 Protein 2e-60 41
t1257 NP_805060.1 pathogenicity island protein Not tested SPI-2 Protein 2e-60 41
SC1410 YP_216397.1 inner membrane protein Not tested SPI-2 Protein 9e-61 41
ORF 319 CAB37410.1 - Not tested SPI-2 Protein 1e-60 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PFLCHA0_c51050 YP_008002358.1 hypothetical protein VFG0490 Protein 8e-61 41