Gene Information

Name : czcR4 (PFLCHA0_c50690)
Accession : YP_008002322.1
Strain : Pseudomonas fluorescens CHA0
Genome accession: NC_021237
Putative virulence/resistance : Virulence
Product : transcriptional activator protein CzcR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5675777 - 5676679 bp
Length : 903 bp
Strand : +
Note : -

DNA sequence : 
ATGGGTGCCCCGGACGGCAGGACGCAAGCCATCAGGCCGAGAAGAATCAACACCAGCAGGATGCCTTTGAGCACTGAAGA
CAGGTTCATGGCTGTGCCGCGCTCTGCAGTTAAGAAGAGCCTGAGCTTAGAGAGCGCCGGGTTAACAGCGGGTAAACATC
AATGGAAAAGCCTCGGCTTCCGCTATCCTTCGGGCCATCGAGTGCCAAGGGTCCAAGGGGACGTTTCCGTGCATATTCAC
CTGCTGCTGGTCGAGGACAACCTCGACCTGGCCAATACCGTCATCGAGTACCTGGAAATCGGCGGCATCGTCTGCGACCA
CGCCAGCAACGGCCAGACCGGCCTTAACCTGGCCCTGAGCCAGCATTACGACGTGATCCTCCTCGACATCATGCTTCCGC
GGCTGGACGGCCAGCAGCTGTGCGAACAACTGCGCCAGAACGGCAGCCAGACCCCCATCCTCATGCTCACCTCGCTGGAT
GCCCTGTCGGACAAGCTCGCCAGCTTTGCCGCCGGTGCCGACGATTATCTGGTCAAGCCCTTCGAACTGGCCGAGCTGGT
GGCCAGGATCCGTGCCCTGAGCCTGCGCCGCAGCGGCCAGGCCAGCCGCCTGCAGGTGGCCGACCTGGTAATGGAGCTGA
CCACCCGCAAGGTCAGCCGCGCCGGCCAGGAACTGCACCTGTCGCCCATCTGCTGGACCCTGCTGGAATGCCTGATGCGC
GCCAGCCCCGAGCCTGTCACCCGGGAACGCCTGGAGGCGACGATCTGGGGCGACGAGCCGCCCGACAGCAACACCCTCAA
GGTGCATATGCACCGGCTGCGCAAGACTGTGGACAAGTCCTTCGACCAGCCCCTGATCCACACCCTTCCCGGTATTGGCA
TACAGCTGAGGTCACATGCGTAA

Protein sequence : 
MGAPDGRTQAIRPRRINTSRMPLSTEDRFMAVPRSAVKKSLSLESAGLTAGKHQWKSLGFRYPSGHRVPRVQGDVSVHIH
LLLVEDNLDLANTVIEYLEIGGIVCDHASNGQTGLNLALSQHYDVILLDIMLPRLDGQQLCEQLRQNGSQTPILMLTSLD
ALSDKLASFAAGADDYLVKPFELAELVARIRALSLRRSGQASRLQVADLVMELTTRKVSRAGQELHLSPICWTLLECLMR
ASPEPVTRERLEATIWGDEPPDSNTLKVHMHRLRKTVDKSFDQPLIHTLPGIGIQLRSHA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-30 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
czcR4 YP_008002322.1 transcriptional activator protein CzcR BAC0125 Protein 9e-35 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
czcR4 YP_008002322.1 transcriptional activator protein CzcR VFG0473 Protein 9e-28 41
czcR4 YP_008002322.1 transcriptional activator protein CzcR VFG0596 Protein 6e-31 41