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Name : capD2 (PFLCHA0_c43710) Accession : YP_008001634.1 Strain : Pseudomonas fluorescens CHA0 Genome accession: NC_021237 Putative virulence/resistance : Virulence Product : capsular polysaccharide biosynthesis protein CapD Function : - COG functional category : - COG ID : - EC number : - Position : 4946907 - 4948895 bp Length : 1989 bp Strand : - Note : - DNA sequence : ATGTTTCGTCAGTGGTTGCTTGAGCTTCCGAGGCGCCAAAAACGCTTGATCCAAGTCGCAGTAGATACTGTGCTTGTCTG GCTTGCGTTGTGGTTAGCGTTCCTTGTACGTCTTGGCATTGATGAAATTGCCAATCCATTAGAGGCGCACCCATGGCTTT TCCTGTTTGCACCTTTAGTTTCTATTCCACTATTCATCCATTTCGGTCTATATCGAGCAGTTTTACGTTATTTTGGTACC GATGCACTCATCGCTATTACTAAGGCTGTGACGTTGTCTGCGTTGGTAATGGGGGTTATTGTTTATGTTTATAGTAATCA TAAGTTTGTAGTTCCTCGTTCTATTGTTTTTAATTTCTGGTGGTTGAGCCTCATCATGATTGGAGGCTTGCGCTTAGCAA TGCGTCAATACTTTCTTGATGATTGGTTTTCTACAACACAACACATGCCTTTCTCCAATACAGATAATAATCTTCCTAAA GTTGCTATTTATGGAGCAGGCGCTGCTGGTAATCAACTGGTTGCGGCGTTGAGGATGGGGCGAGCAATGCGTCCTGTTGC TTTTATTGACGATGATAAGAGCATTGCAGACAGGGTAATCGCCGGACTACATGTTTATCAGCCCAAAAATATTCAACGAA TGATTGATGCAACTGGAGCGCAGGAAGTTCTTTTGGCCATTCCTTCTTCAAGCCGTGGGCGTCGTCGTGAAATCTTGAGC TTTCTTGAAAACTATCCTTTTCATGTTCGAAGTGTTCCCGGGTTTATGGATCTCGCCAGTGGCCGAGTGAAAGTTGATGA TATTCAGGCTGTTGATATTGCTGATTTGTTAGGACGTGACGCAGTTCCGGCTCAAGAGGATTTGCTTGAACGCTGTGTGA CGAAGAAGGTAGTTCTTGTAACTGGCGCCGGAGGATCCATTGGCTCCGAGCTATGTCGGCAAATATTGCTTCTTCGTCCT ACTGTATTGTTGTTGTTCGAGCATAGCGAGTTTAATCTCTATAGTATTTTTTCCGAGTTAGAAGGGCGTGTTGCTCGTGA GTCACTTTCCGTAAAGGTATTACCTATTCTTGGCACTATAAAAAGTCATGAAAAGCTCGTTGATATAATGACTACCTGGA AAGTTAATACAGTTTACCATGCTGCGGCTTATAAGCATGTCCCAATGGTAGAACATAATATTTCCGAAGGCTTTTTTAAT AATGTAATCGGCACGCTTAATACAGCCCAGGCAGCATTGATATCTGGTGTTACAGATTTTGTCTTGATATCTACAGATAA GGCAGTTCGTCCCACCAATATAATGGGAAGCACTAAACGCTTGGCTGAGCTGACGTTACAAGCACTTAGTCGAGAAAAAG ATCCAGTTTTATTTGATGTGGCTGGTTGTGAACAGATAAGAAACAACACTCGATTTACAATGGTTCGTTTCGGTAATGTT TTGGGCTCTTCAGGTTCTGTAATTCCATTGTTTCATAAACAAATACAGTCTGGTGGCCCCTTGACTGTTACTCACCCTAA AATTACTCGATATTTCATGACCATTCCTGAAGCTGCACAGCTAGTTATTCAAGCGGGGTCGATGGGCTTGGGCGGGGATG TATTTGTATTGGATATGGGAGAACCGGTAAAAATTGTAGAACTGGCTGAGAAAATGATTCATCTCTCAGGTCTGACTGTT CGCTCGGAAAAAATGCCTCATGGCGATATTGCTATCGAATTTACCGGGTTGAGGCCCGGTGAGAAACTTTACGAAGAGCT ATTAATAGGTGATAACGTTTCTATCACTCCACACCCGATGATTATGACAGCTAATGAAGATTATTTGCCTTGGGGTGTGT TGAAAACTAACCTAGCTAAGATGCTCGAGTCTGTTCATCAAGATGATTACGTCACATTCCGCCAATTGTTGCGTGAAACA GTGAGTGGCTATACGCCAGACGGTGAAATTGTCGATTGGATTTATCAACAACGCCGTTTACAACCATAA Protein sequence : MFRQWLLELPRRQKRLIQVAVDTVLVWLALWLAFLVRLGIDEIANPLEAHPWLFLFAPLVSIPLFIHFGLYRAVLRYFGT DALIAITKAVTLSALVMGVIVYVYSNHKFVVPRSIVFNFWWLSLIMIGGLRLAMRQYFLDDWFSTTQHMPFSNTDNNLPK VAIYGAGAAGNQLVAALRMGRAMRPVAFIDDDKSIADRVIAGLHVYQPKNIQRMIDATGAQEVLLAIPSSSRGRRREILS FLENYPFHVRSVPGFMDLASGRVKVDDIQAVDIADLLGRDAVPAQEDLLERCVTKKVVLVTGAGGSIGSELCRQILLLRP TVLLLFEHSEFNLYSIFSELEGRVARESLSVKVLPILGTIKSHEKLVDIMTTWKVNTVYHAAAYKHVPMVEHNISEGFFN NVIGTLNTAQAALISGVTDFVLISTDKAVRPTNIMGSTKRLAELTLQALSREKDPVLFDVAGCEQIRNNTRFTMVRFGNV LGSSGSVIPLFHKQIQSGGPLTVTHPKITRYFMTIPEAAQLVIQAGSMGLGGDVFVLDMGEPVKIVELAEKMIHLSGLTV RSEKMPHGDIAIEFTGLRPGEKLYEELLIGDNVSITPHPMIMTANEDYLPWGVLKTNLAKMLESVHQDDYVTFRQLLRET VSGYTPDGEIVDWIYQQRRLQP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 5e-80 | 42 |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 3e-77 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| capD2 | YP_008001634.1 | capsular polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 3e-119 | 49 |
