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Name : rcsC6 (PFLCHA0_c39790) Accession : YP_008001249.1 Strain : Pseudomonas fluorescens CHA0 Genome accession: NC_021237 Putative virulence/resistance : Unknown Product : sensor protein RcsC Function : - COG functional category : - COG ID : - EC number : 2.7.13.3 Position : 4468383 - 4471556 bp Length : 3174 bp Strand : + Note : - DNA sequence : ATGCCACATCCCAATGCCCTTCTGGAGAAACTCGCCAGCAGTTCCTCGCGCCTGAACAAGAGCCTGCTGGTGCTCGGAGC CCTGTTGTTGCTGTTGCTGGGCATCAGCTATGTGGGGGTGACGCGCATGATCGAAGAGCGGCGCGAAACCTTGCAGTTTC ACTTCGCTCGGCTGATGGAGAATGTCCACGAACAGGAAGTGTTCCTGCAGGATATCGCCCGGGAAAGCGTCAAGAGCGAA CGGCTGCCCAGTCTCATGTTGCCACCCTACTCACAAAAACCCCTGCCCGATGAAGGGCCGAATATTTACGAGGGCCGCGG CCTGCCGTTTTCGCTGCCCTATAGCTTGAAGATCAATACGGACAGGATTGCCCCCAGCCAATACCCGAAGATCTTTGCGC TGGGTACCCATTTGGCGGCCTATTACAGTGCGTTCTGGTCGGCCTCGCACTATCAGTCGCCCCAAGTCGCCCTGATCAAT GGCCCCGACAATTTTGACCTTGCCGTACCCTCCACCGGGCGTTTGCGCGGTCCGGGACGGGTACCAATGCCTATGGGCGA TCTGATCGATGCGATGACCCGCTTGAACAAGCGCCTGCGCGGGCAGAACTCGCCATTGCCAGATTTTCAGGTGCACTGGG AACCCTATGTCTCTTCCAATGACGACAAGAGCGCCCCCACCCTGCTGGCGTACGTGAGTATCAACCTGGCGAAAACCGCA TTGACCGTCGAGGGCGCCGATACCTGGGTGGTGCTGGGCTCGCTGATGAACCTGTCTCAGGTCAACAACATCGAGCGGTT GATGCAGTGGTCGATCTACGATGACTTCACCTTGATCACCCCTCGTGGCGTGGTATTGACCGGAGCTCTGAAACCCGGCG AGGTGCTGGATGAAGGGGTGAACTTCAACCGCGACGGCCTGGTGTTCAAACTGAGCAGCCCCGGGGAGCATCACTGGACG GCGATCTACTTCATCAGCCTGCGCAGCTTCCTCGATTACGCGCTGTGGCCATTGCTTGGCCTGGTCGCGCTGGTGCTTGC GCTGCTCGGTTGCAGTCGGGCGATCAATCGCTGGTACCAGGCCCGGGTCATCCTGCCCGCGCAGAGCGCCCACGCCAGCA TCGCTGAAAGCGAGGCATTCAGCCGCACGGTGATCGATACGGCGCCGACCGGCCTGTGCGTGATTCGCCGCAGCGATCAC CAGGTGCTGCTGGAAAACCAGCGCGCCCAGCAATGGCACGACAACGGCCAACTGATGAGCTTGCTCACGCCCCTTACGGG CCCCGGTCATGCCGATCTTGAAATCAATGGGCGCCACTTGCATGTTGCCTTCGTGCCCACCCGCTATCAGGGCCAGGACG CCTGGTTATGTGCGTTGCATGACGTGACCCGGCATGTCGAAGATGCAGCGGCGCTGGAAGAGGCGCGCCAGGCCGCCGAC TCGGCAAACCAGGCCAAAAGCCGTTTCCTCGCCACCATGAGCCACGAGATCCGTACTCCCCTGTACGGCGTGCTGGGAAC TCTGGAGCTGCTTGGCCTGACCTCGCTCGCCCCGCGCCAGCAGGATTACCTGCACACCATCCAGCGCTCCTCCGCCACGT TGTTCCAACTGGTCAGCGATGTACTGGATGTGTCGAAAATCGAAGCCGGACAGATGACCCTCGAACTTGAGGATTTCTGC CCGCTGGAGCTGACCGAAGACACCGTGCGCACCTACAGCGCCTTCGCCCGATCCAAGGGCCTGCTGCTCTATGCCTGCAT CGACCCGGCGCTGCCGGACCGGTTGCGCGGTGACCCGATACGGATTCGCCAGATCCTCAACAACTTGTTGAGCAACGCCA TCAAGTTCACCGATAACGGTCGCGTGGTGCTGCGGGTTCAGTTGCTGGAAAGCGACGACGGCCGTGCCCATGTGCAATGG CAAGTCAGCGATTCGGGAAAGGGGATTACCCAGGCGCAACAACAGCAACTGTTCGACCCTTTCTATCAGGTCAACGACGC CAACGCGCAAGCCGGTGCCGGATTGGGACTGGCCATTTGCAAATGGCTGTGCGAGTTGATGGCGGGCCAGTTGAACGTGG TCAGCGAGCCCGGGCTCGGCAGCAGTTTCATCCTTCAACTCTCGCTGGAACACGCACCCGGTGAGCTGGCCGATTGCCCT GTGTTCGGCCCCGGCAGCGCCGCCGTCTATGTGCGTGCAAAGGTCGCTGAACAGGCCCAACACCTGATGGCCTGGCTCAA GCGTTTTGGCCTCGACTGCCACCCGCTGACGGCCGGTACACCAGTGTCATCGGCACTGCTGGTAGAGCTTTGCTCGCTGG CCAATACCGCGGCCTGGCCGGGTCCGAAGGTCGTCGCCACGGCGGATGGCCCCAACCCTTCGCAATTACGCGGTACCGTC CGAGAAGTCGACGCCCATGATGTCCGCGCGATCGCCTGGGCGATTTACCAGGCCCAGCACGGCGCTCGCACCGACAGCCA ACCTTCGTCGCCGGATACCCCCCGGCAGTTGAATCTGCAAGTGCTGGTGGCGGAAGACAATGTGATCAACTCGGCGATCA TCAAGGAGCAACTGGAAGTGCTGGGCTGCTCGGTGGTCGTCGCGGCCAATGGCGAGCTTGCCCTGGCGCAGTGGTCGCCC GGACGTTTCGATCTGCTGCTGACCGACGTCAATATGCCGGTCATGAACGGCTACCAATTGACCACGGCGTTGCGACAACT GGATCAGGCCTTGCCGATTATCGGCGTCACCGCCAACGCCTTGCGCGAAGAAGGCGAGCGCTGCGCTAGCGTCGGCATGA ACGCCTGGATGGTCAAGCCGCTGAACCTCGCCACCCTGCGCGCGCACCTGGAAAGACATTGCAAAATCGCCCTACCGGCG ACCAGCGTTGCGCCTCTAAAGCTGTCATCGAACATGCGCGAACTCTTTGTCACGACGCTACGCCAGGACATGCAGGTCAC GCTGACGGCACTGGACAACGCCGATGCCCATCGCGTGGCGCAACAGCTGCACAGCATGGCCGGTGCATTGGGTGCGGTAC AGCTCGAGGAACTGGCCACAACCTTCGTCGAGCTGGAGTGTCGCCTGAACGGCATGAGCGTGACCAGCGCCCTGGACCTG GAGGTGCGCCAGAATCTGGCTCGATTGAAAGACCTGCTGGACACCCTTGAATAA Protein sequence : MPHPNALLEKLASSSSRLNKSLLVLGALLLLLLGISYVGVTRMIEERRETLQFHFARLMENVHEQEVFLQDIARESVKSE RLPSLMLPPYSQKPLPDEGPNIYEGRGLPFSLPYSLKINTDRIAPSQYPKIFALGTHLAAYYSAFWSASHYQSPQVALIN GPDNFDLAVPSTGRLRGPGRVPMPMGDLIDAMTRLNKRLRGQNSPLPDFQVHWEPYVSSNDDKSAPTLLAYVSINLAKTA LTVEGADTWVVLGSLMNLSQVNNIERLMQWSIYDDFTLITPRGVVLTGALKPGEVLDEGVNFNRDGLVFKLSSPGEHHWT AIYFISLRSFLDYALWPLLGLVALVLALLGCSRAINRWYQARVILPAQSAHASIAESEAFSRTVIDTAPTGLCVIRRSDH QVLLENQRAQQWHDNGQLMSLLTPLTGPGHADLEINGRHLHVAFVPTRYQGQDAWLCALHDVTRHVEDAAALEEARQAAD SANQAKSRFLATMSHEIRTPLYGVLGTLELLGLTSLAPRQQDYLHTIQRSSATLFQLVSDVLDVSKIEAGQMTLELEDFC PLELTEDTVRTYSAFARSKGLLLYACIDPALPDRLRGDPIRIRQILNNLLSNAIKFTDNGRVVLRVQLLESDDGRAHVQW QVSDSGKGITQAQQQQLFDPFYQVNDANAQAGAGLGLAICKWLCELMAGQLNVVSEPGLGSSFILQLSLEHAPGELADCP VFGPGSAAVYVRAKVAEQAQHLMAWLKRFGLDCHPLTAGTPVSSALLVELCSLANTAAWPGPKVVATADGPNPSQLRGTV REVDAHDVRAIAWAIYQAQHGARTDSQPSSPDTPRQLNLQVLVAEDNVINSAIIKEQLEVLGCSVVVAANGELALAQWSP GRFDLLLTDVNMPVMNGYQLTTALRQLDQALPIIGVTANALREEGERCASVGMNAWMVKPLNLATLRAHLERHCKIALPA TSVAPLKLSSNMRELFVTTLRQDMQVTLTALDNADAHRVAQQLHSMAGALGAVQLEELATTFVELECRLNGMSVTSALDL EVRQNLARLKDLLDTLE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| rcsC | AAP84165.1 | RcsC | Not tested | PAPI-1 | Protein | 4e-157 | 41 |
