Gene Information

Name : qseB1 (PFLCHA0_c39100)
Accession : YP_008001180.1
Strain : Pseudomonas fluorescens CHA0
Genome accession: NC_021237
Putative virulence/resistance : Virulence
Product : transcriptional regulatory protein QseB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4396693 - 4397397 bp
Length : 705 bp
Strand : +
Note : -

DNA sequence : 
ATGCGCCCCTTCCCTGCCCCCTCGCCCGACCGAGAACCGCCCATGCGCCTGCTGCTTGTCGAAGATGATCGTGCCCTCGG
CCAGGGCATCCGCGTGGCCCTGAGCGCCGAAGGCTACACCCTGGACTGGCTGCAGGACGGTGCCAGCGCCCTGCACGCCC
TGCGCACCGAAAGCTTCGACCTGTTGCTGTTGGACCTGGGCCTGCCGCGGCTCGACGGCCTGGAGTTGTTGCAGCAATTG
CGCGCCGCCCAGCAGGACCTGCCAGTGCTGATCCTCACCGCCCGCGACGGCACCGCCGAACGCATCGCCGGGCTGGATGC
CGGGGCCGACGACTACCTGGTCAAGCCCTTCGATGTCGAGGAATTCAAGGCCCGGGTCCGCGCCCTGCTGCGCCGCAGCC
AGGGTCGTGCCCAGCCGCTGCTGGAACACGCCGGTATCCGCCTCGACCCGGCCAACCAGCAGGTGCAGTACCACGACGCC
GAGGTGGTGCTGACGCCCATGGAATACCAGTTGCTGCACCAGCTGATGGTGCGCCCGGGCAAGGTGGTGACCCGCGAGCG
CCTGTCCCGGGCGCTGTACGGCTGGCAGGACCGGGTCGAGAGCAACACCCTGGAAGTGCTGATCCATAACCTGCGCAAGA
AGCTCTGCAGCGAGCTGATCCGCACTGTGCGCGGCGTCGGTTACGTGCTGGCGCTCAAGCCATGA

Protein sequence : 
MRPFPAPSPDREPPMRLLLVEDDRALGQGIRVALSAEGYTLDWLQDGASALHALRTESFDLLLLDLGLPRLDGLELLQQL
RAAQQDLPVLILTARDGTAERIAGLDAGADDYLVKPFDVEEFKARVRALLRRSQGRAQPLLEHAGIRLDPANQQVQYHDA
EVVLTPMEYQLLHQLMVRPGKVVTRERLSRALYGWQDRVESNTLEVLIHNLRKKLCSELIRTVRGVGYVLALKP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 9e-29 45
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 8e-19 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
qseB1 YP_008001180.1 transcriptional regulatory protein QseB BAC0197 Protein 2e-28 42
qseB1 YP_008001180.1 transcriptional regulatory protein QseB NC_002516.2.879194.p Protein 1e-23 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
qseB1 YP_008001180.1 transcriptional regulatory protein QseB VFG0473 Protein 2e-33 48
qseB1 YP_008001180.1 transcriptional regulatory protein QseB VFG1390 Protein 6e-28 46
qseB1 YP_008001180.1 transcriptional regulatory protein QseB VFG0596 Protein 3e-19 41