Gene Information

Name : czcR2 (PFLCHA0_c31780)
Accession : YP_008000452.1
Strain : Pseudomonas fluorescens CHA0
Genome accession: NC_021237
Putative virulence/resistance : Virulence
Product : transcriptional activator protein CzcR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3540894 - 3541568 bp
Length : 675 bp
Strand : +
Note : -

DNA sequence : 
ATGCGCATTCTGGTGATTGAGGACGAACCCAAGACGGCCGACTACCTGCATCAGGGCCTGAGTGAAAGTGGCTATGTGGT
GGACCGGGCGAACAATGGCGTGGACGGCCTGCACCTGATTCAACAACAGCCCTATGAATTGGTAATCCTGGATATCAACC
TGCCCGGCAAAGATGGTTGGCAAGTTCTTGAACAACTGCAGGGAAACTATCCCGCACGGGTCATGATGTTGACTGCCCGC
GGGCGCCTGGAAGACAAGGTCAAGGGCCTGGATATGGGCGCCGATGATTATCTGGTCAAACCGTTTCAATTTCCCGAGTT
GCTGGCCCGGGTTCGTACCCTGATGCGTCGTAGTGAAGTCATTGTCCAACCGGAAGTTCTGCAAGTTGCCGACCTGCAAC
TTGACCCGCGCCGTCATCGGGCTTATCGCGGCAGTCGGCGTATCGACCTGACGACCAAGGAGTTCACCCTGCTGCATGTA
TTGATGCGCCACAGCGGAGAAGTACTGACCCGCACCCAGATCATTTCCCTGGTCTGGGACATGAACTTCGACTGCGACAC
CAATGTGGTGGAAGTCTCCATCAGCCGCTTGCGGGGCAAGATCGACGACGCCAGTGACGTCAAGCTGATCCATACCCTGC
GCGGTGTCGGTTATGTCCTGGAAGCACGCCCATGA

Protein sequence : 
MRILVIEDEPKTADYLHQGLSESGYVVDRANNGVDGLHLIQQQPYELVILDINLPGKDGWQVLEQLQGNYPARVMMLTAR
GRLEDKVKGLDMGADDYLVKPFQFPELLARVRTLMRRSEVIVQPEVLQVADLQLDPRRHRAYRGSRRIDLTTKEFTLLHV
LMRHSGEVLTRTQIISLVWDMNFDCDTNVVEVSISRLRGKIDDASDVKLIHTLRGVGYVLEARP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-52 52
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-52 51

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
czcR2 YP_008000452.1 transcriptional activator protein CzcR BAC0083 Protein 4e-61 57
czcR2 YP_008000452.1 transcriptional activator protein CzcR BAC0125 Protein 1e-61 57
czcR2 YP_008000452.1 transcriptional activator protein CzcR BAC0197 Protein 3e-63 56
czcR2 YP_008000452.1 transcriptional activator protein CzcR BAC0638 Protein 1e-54 55
czcR2 YP_008000452.1 transcriptional activator protein CzcR BAC0111 Protein 1e-59 54
czcR2 YP_008000452.1 transcriptional activator protein CzcR BAC0308 Protein 9e-55 53
czcR2 YP_008000452.1 transcriptional activator protein CzcR BAC0347 Protein 3e-54 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
czcR2 YP_008000452.1 transcriptional activator protein CzcR VFG0596 Protein 4e-53 52
czcR2 YP_008000452.1 transcriptional activator protein CzcR VFG1390 Protein 2e-40 43
czcR2 YP_008000452.1 transcriptional activator protein CzcR VFG1389 Protein 3e-36 43