Gene Information

Name : copR (PFLCHA0_c20200)
Accession : YP_007999305.1
Strain : Pseudomonas fluorescens CHA0
Genome accession: NC_021237
Putative virulence/resistance : Virulence
Product : transcriptional activator protein CopR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2245082 - 2245762 bp
Length : 681 bp
Strand : -
Note : -

DNA sequence :

ATGAAACTGCTGATCGTCGAAGACCAACCCAAAACCGGCCACTACCTGCGCCAGGGCCTGAGCGAGGCCGGCTTCAACGC
CGAACTGGTGGCCGACGGCAGCACCGGCCAGCACCTGGCCCTGACCGGCGACTACGCTCTGCTGATTCTCGACGTGATGC
TGCCGGGTCGCGACGGCTGGCAGATCCTCCAGGCGGTGCGCAGCGCCGGGCTGGAAGTGCCGGTACTGTTCCTCACCGCC
CGGGATGCCGTGCAAGACCGGGTGCACGGCCTGGAACTGGGGGCCGACGACTACCTGGTCAAGCCTTTTGCCTTCTCCGA
ACTGCTGGCCCGGGTCCGCAGCCTGCTGCGCCGGGGCAGCGCCGTGGCCCAGGAAACCAGCCTGCAACTGGCAGACCTGC
GCCTGGACCTGATCCGCCGCCGGGTAGAACGCGGCAGCCAGCGCATCGACCTGACCGCCAAGGAATTCGCCCTGCTGGAA
ATGCTCCTGCGGCGCCAGGGCGAAGTCCTGCCCAAGTCGCTGATTGCCTCCCAGGTCTGGGACATGAATTTCGACAGCGA
TACCAACGTCATCGAAGTAGCCATCCGCCGCCTGCGCCTGAAGATCGACGACGATTTCCCGAACAAACTGATCCATACCG
TACGCGGCATGGGCTACGTGCTCGAAGAGCGCCAGGCCTGA

Protein sequence :

MKLLIVEDQPKTGHYLRQGLSEAGFNAELVADGSTGQHLALTGDYALLILDVMLPGRDGWQILQAVRSAGLEVPVLFLTA
RDAVQDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGSAVAQETSLQLADLRLDLIRRRVERGSQRIDLTAKEFALLE
MLLRRQGEVLPKSLIASQVWDMNFDSDTNVIEVAIRRLRLKIDDDFPNKLIHTVRGMGYVLEERQA

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
copR	NP_460069.2	transcriptional regulatory protein YedW	Not tested	SPI-5	Protein	5e-52	56
copR	AAC33719.1	regulatory protein CopR	Not tested	SPI-5	Protein	2e-51	55

• Homologs from CARD and BacMet (resistance genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
copR	YP_007999305.1	transcriptional activator protein CopR	BAC0083	Protein	3e-69	71
copR	YP_007999305.1	transcriptional activator protein CopR	BAC0638	Protein	3e-62	70
copR	YP_007999305.1	transcriptional activator protein CopR	BAC0197	Protein	2e-61	67
copR	YP_007999305.1	transcriptional activator protein CopR	BAC0111	Protein	5e-65	65
copR	YP_007999305.1	transcriptional activator protein CopR	BAC0308	Protein	2e-62	60
copR	YP_007999305.1	transcriptional activator protein CopR	BAC0125	Protein	1e-59	60
copR	YP_007999305.1	transcriptional activator protein CopR	BAC0347	Protein	3e-57	59
copR	YP_007999305.1	transcriptional activator protein CopR	NC_002516.2.879194.p	Protein	2e-26	42
copR	YP_007999305.1	transcriptional activator protein CopR	BAC0487	Protein	6e-27	41

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
copR	YP_007999305.1	transcriptional activator protein CopR	VFG0596	Protein	2e-52	56
copR	YP_007999305.1	transcriptional activator protein CopR	VFG1390	Protein	1e-36	45