|
Name : gabD1 (PFLCHA0_c01870) Accession : YP_007997492.1 Strain : Pseudomonas fluorescens CHA0 Genome accession: NC_021237 Putative virulence/resistance : Unknown Product : succinate-semialdehyde dehydrogenase Function : - COG functional category : - COG ID : - EC number : 1.2.1.79 Position : 221620 - 223089 bp Length : 1470 bp Strand : + Note : - DNA sequence : ATGCGCGGTGCTGTTAAGGAAGCCGACATGCAGCTCAAAGACGCCCAGTTGTTCCGCCAACAAGCCTTCATCGATGGAGC TTGGGTCGACGCGGACAACGGCCAGACGATCAAGGTCAACAACCCCGCTACCGGTGAAATCCTCGGTACCGTGCCAAAGA TGGGCGCTGCCGAAACCCGCCGCGCCATCGAGGCCGCCGACAAGGCCCTGCCGGCCTGGCGTGCCCTGACCGCCAAGGAG CGCGCCACCAAGCTGCGCCGCTGGTATGAATTGCTGATCGAGAACCAGGACGACCTGGGTCGCCTGATGACCCTGGAGCA GGGTAAGCCGCTGGCCGAAGCCAAGGGCGAAATCGCCTACGCCGCCTCCTTCATCGAATGGTTCGCCGAAGAAGCCAAGC GCATCTACGGCGACGTGATTCCCGGCCACCAGCCCGACAAGCGCCTGATCGTGATCAAGCAGCCGATCGGCGTGACCGCG GCCATCACCCCGTGGAACTTCCCGGCGGCGATGATCACCCGTAAAGCCGGCCCGGCCCTGGCCGCCGGTTGCACCATGGT CATCAAGCCCGCTTCGCAAACCCCGTTCTCGGCCCTGGCCCTGGTGGAACTGGCGCACCGTGCCGGCATCCCGAAAGGCG TGCTGAGTGTGGTCACCGGCAGCGCCGGCGACATCGGCGGCGAGCTCACCAGCAACCCGATCGTGCGCAAGCTGTCGTTC ACCGGCTCCACCGAGATCGGTCGCCAGCTGATGGCCGAATGCGCCAAGGACATCAAGAAAGTCTCCCTGGAGCTGGGCGG CAACGCGCCGTTCATCGTGTTCGACGACGCGGACCTGGATAAGGCCGTCGAAGGCGCGATCATCTCCAAGTACCGCAACA ACGGCCAGACCTGCGTCTGCGCCAACCGCCTGTACATCCAGGATTCGGTCTATGACGCCTTCGCCGAGAAATTGAAGGCA GCAGTGGCCAAGCTGAAGATCGGCAACGGCCTGGAAGAAGGCACCACCACTGGCCCGCTGATCGACGAAAAAGCCGTGGC CAAGGTCCAGGAACACATCGCCGACGCCCTGAAAAAAGGCGCGACCCTGCTGGCCGGCGGCAAGTCCATGGAAGGCAACT TCTTCGAGCCGACCATCCTGGTCAACGTGCCCAAGGATGCAGCCGTGGCCAAGGAAGAAACCTTTGGCCCACTGGCGCCG CTGTTCCGCTTCAAAGACGAAGCCGAAGTCATCGCCATGTCCAACGACACCGAATTCGGCCTGGCCTCGTACTTCTATGC CCGCGACCTGGGCCGTGTGTTCCGTGTGGCCGAGGCCCTGGAATACGGCATGGTCGGGGTCAACACCGGCCTGATCTCCA ACGAAGTGGCGCCGTTCGGCGGCATCAAGGCCTCGGGCCTGGGCCGTGAAGGTTCCAAGTACGGGATCGAGGATTACCTG GAAATCAAATACCTCTGCCTGGGTATCTGA Protein sequence : MRGAVKEADMQLKDAQLFRQQAFIDGAWVDADNGQTIKVNNPATGEILGTVPKMGAAETRRAIEAADKALPAWRALTAKE RATKLRRWYELLIENQDDLGRLMTLEQGKPLAEAKGEIAYAASFIEWFAEEAKRIYGDVIPGHQPDKRLIVIKQPIGVTA AITPWNFPAAMITRKAGPALAAGCTMVIKPASQTPFSALALVELAHRAGIPKGVLSVVTGSAGDIGGELTSNPIVRKLSF TGSTEIGRQLMAECAKDIKKVSLELGGNAPFIVFDDADLDKAVEGAIISKYRNNGQTCVCANRLYIQDSVYDAFAEKLKA AVAKLKIGNGLEEGTTTGPLIDEKAVAKVQEHIADALKKGATLLAGGKSMEGNFFEPTILVNVPKDAAVAKEETFGPLAP LFRFKDEAEVIAMSNDTEFGLASYFYARDLGRVFRVAEALEYGMVGVNTGLISNEVAPFGGIKASGLGREGSKYGIEDYL EIKYLCLGI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| orf17 | AAO17183.1 | Orf17 | Not tested | tcd island | Protein | 2e-153 | 66 |
