Gene Information

Name : troB (SLY_0268)
Accession : YP_007996469.1
Strain : Candidatus Phytoplasma australiense NZSb11
Genome accession: NC_021236
Putative virulence/resistance : Virulence
Product : Zinc transport system ATP-binding protein troB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 221594 - 222358 bp
Length : 765 bp
Strand : +
Note : -

DNA sequence : 
ATGCATAATAATAAAAAAGAAATAGCTATTAGTGTCAAAAATTTAACCGTTAGTTATCATTTAAAACCAGTTTTGTGGGC
TGTTGATGTTGATTTTATTAAAAATTCTTTAACTTGCGTTTTAGGACCTAATGGAGCTGGCAAATCCACTTTAATCAAAA
CTTTAATTGGTTTAATTCCTAAAGTTTCAGGTAATTTATTGTTCCAAGGGCAATCATATAACAAAATGAAAAAAAAAATC
GCCTATGTTCCTCAACGCAATTCAGTTGATTGGGATTTTCCAATAACTGTTTTTGATGTTGTTTTAATGGGTAGATACGG
TCATTTAGGTTGGTTTAAACGTCCTACCAAACACGATCGCCAAATAGCCATGCAAGCTTTAGAAAAAGTAGCAATGCAAG
ATTTAAAAGACCGTCAAATTTCAGAATTATCAGGAGGGCAACAACAAAGAATTTTTTTGGCTCGAACTTTGGCCCAACAG
GCAGATATTTATTTAATGGACGAGCCTTTTCAAGGAATTGATATTCAAACAGAAAAAAGAATTATTGCTGTTTTAAAAGA
ATTGCAAAGCCAAAACAAGACCATTATTGTTGTTCATCATGATTTAGAAACTGTTTCAAGTTATTTTGATCATGTTGTTT
TCTTAAACATTAAAAAAATCGCAAGCGGACCTTTAAAAACAACTTTCACTCCTGAAAATATTGCAAAAACTTATCAATCT
TATCAATTAGAAGATTTTTCTTCCTCCCCTCTGAAAAGCAAATGA

Protein sequence : 
MHNNKKEIAISVKNLTVSYHLKPVLWAVDVDFIKNSLTCVLGPNGAGKSTLIKTLIGLIPKVSGNLLFQGQSYNKMKKKI
AYVPQRNSVDWDFPITVFDVVLMGRYGHLGWFKRPTKHDRQIAMQALEKVAMQDLKDRQISELSGGQQQRIFLARTLAQQ
ADIYLMDEPFQGIDIQTEKRIIAVLKELQSQNKTIIVVHHDLETVSSYFDHVVFLNIKKIASGPLKTTFTPENIAKTYQS
YQLEDFSSSPLKSK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 2e-42 45
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 2e-42 45
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 1e-50 45
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 8e-51 45
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 1e-50 45
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 1e-49 44
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 1e-49 44
unnamed CAD33755.1 putative ABC transporter ATP-binding protein Virulence PAI I 536 Protein 3e-34 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
troB YP_007996469.1 Zinc transport system ATP-binding protein troB BAC0400 Protein 1e-66 54
troB YP_007996469.1 Zinc transport system ATP-binding protein troB BAC0350 Protein 6e-51 45
troB YP_007996469.1 Zinc transport system ATP-binding protein troB BAC0440 Protein 2e-45 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
troB YP_007996469.1 Zinc transport system ATP-binding protein troB VFG0526 Protein 6e-51 45
troB YP_007996469.1 Zinc transport system ATP-binding protein troB VFG1496 Protein 2e-34 41