Gene Information

Name : LBFF_0022 (LBFF_0022)
Accession : YP_007994227.1
Strain : Lactobacillus fermentum F-6
Genome accession: NC_021235
Putative virulence/resistance : Unknown
Product : Ribosomal RNA large subunit methyltransferase H
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 23911 - 24390 bp
Length : 480 bp
Strand : +
Note : -

DNA sequence :
ATGAACATTAAGATTATCGGGGTCGGTAAGGTCAAGGAAAAGTACTTTAAGGCCGGGATCGCCGAGTACGCCAAGCGGAT
GGAGCGCTACGCCAAGTTTGAAATTGTCGAGGTACCAGACGAAAAGGCCCCCGAGACCCTCAGTCAGGCCGAAATGGACG
CCGTGATGGCAAAGGAGGGTGAGCGGATCCTGGCGAAGATCAAGGACCGGGAATACGTTTATGCCCTGGCGATTAAGGGC
AAGGAACGTTCCTCAGAGGAGTTCGCCAAGGAAATCAACCAGCTGGCCACTTATGGCCACTCCGATATAACCTTTGTGAT
CGGCGGTTCCTTGGGGCTTAGTCCGGCCGTTTTAAAACGGGCCAACACCCAGATTTCCTTTGGGCGTTTTACTTTGCCCC
ATAAGTTGATGCGCTTGGTCTTAGCCGAGCAAATCTACCGGGCCTTCACGATCATTAATGGCCTGCCCTACCATAAGTAG

Protein sequence :
MNIKIIGVGKVKEKYFKAGIAEYAKRMERYAKFEIVEVPDEKAPETLSQAEMDAVMAKEGERILAKIKDREYVYALAIKG
KERSSEEFAKEINQLATYGHSDITFVIGGSLGLSPAVLKRANTQISFGRFTLPHKLMRLVLAEQIYRAFTIINGLPYHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 2e-36 57
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 2e-36 57
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 2e-36 57
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 4e-36 57
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 2e-36 57
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 4e-36 57
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 2e-36 57
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 2e-36 57
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 2e-36 57
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 2e-36 57
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 2e-36 57
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 2e-36 57
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 1e-35 56
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 7e-33 56
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 3e-36 56
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 1e-35 56
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 3e-35 55
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 4e-36 54
unnamed ACL99851.1 hypothetical protein Not tested Type-V SCCmec Protein 6e-23 52