Gene Information

Name : LBFF_1959 (LBFF_1959)
Accession : YP_007996132.1
Strain : Lactobacillus fermentum F-6
Genome accession: NC_021235
Putative virulence/resistance : Resistance
Product : ABC-type antimicrobial peptide transport system, ATPase component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1983566 - 1984237 bp
Length : 672 bp
Strand : +
Note : -

DNA sequence : 
ATGTCAAATCTAATTTTTGAATCGGTAACAAAAGTTTTTGGAGAAGGGAGTAGTAAGTACGTAGCGCTGGAAAATATTAA
TTTTAAAGCAGAAAGTGGTCAGCTTATTTTAGTTGTAGGGCCATCAGGATCAGGAAAAACTACATTTTTGACTATAGCCG
GCGGGCTGCAGACACCAACTGAGGGTAACGTAAAAATAAATGACAGCACAATTAAAAGTTTATCCAAAAAACAGCAAACA
AAATTAAGATTGGAAAAAATAGGATTTGTTTTACAATCTTATAACTTAGTTCCATTTTTAACGGTCGAAGAACAGTTTAA
ATTAGTAGATAAACTAAAAAAACAAAATTTAACTGAACAAAAAATGCATGAACTTCTATCTGATTTAGGACTTTTAGAAC
TCCTAAAAAAATATCCTAATCAACTTTCTGGTGGACAAAAGCAACGTGTGGCAATTGCTAGAGCATTATACACTGATCCT
GACTATATCTTAGCGGATGAACCCACAGCCGCCTTAGATACGGATAGATCTATGAAAGTAATCGAGTTACTCAGAGATTT
AGCACATAAGAGAAATAAAATTATTATTGTAGTTACTCATGACTTAAGGTTAAAAAATACGGCAGACAAAGTTTATCAGA
TAATTGATGGTAAGATGCAAATGATAAATTAG

Protein sequence : 
MSNLIFESVTKVFGEGSSKYVALENINFKAESGQLILVVGPSGSGKTTFLTIAGGLQTPTEGNVKINDSTIKSLSKKQQT
KLRLEKIGFVLQSYNLVPFLTVEEQFKLVDKLKKQNLTEQKMHELLSDLGLLELLKKYPNQLSGGQKQRVAIARALYTDP
DYILADEPTAALDTDRSMKVIELLRDLAHKRNKIIIVVTHDLRLKNTADKVYQIIDGKMQMIN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAP55232.1 unknown Not tested SaPIbov2 Protein 2e-45 51
SARLGA251_00480 YP_005754062.1 ABC-type transport system ATPase Not tested Type-XI SCCmec Protein 1e-41 50
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-30 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-30 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-30 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-30 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LBFF_1959 YP_007996132.1 ABC-type antimicrobial peptide transport system, ATPase component CP001581.1.gene798.p Protein 1e-29 43