Gene Information

Name : pKPR_0089 (pKPR_0089)
Accession : YP_007988945.1
Strain :
Genome accession: NC_021231
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 84763 - 85170 bp
Length : 408 bp
Strand : +
Note : similar to transglycosylase SLT domain protein from Escherichia coli 101-1 (tr|B3XKH3)

DNA sequence :
ATGGCAGGACGGGACTATCGAATAGATCCCGATCTGCTGCGGGCTATTTCATGGCAGGAGTCTAAATGGAAGGTGAATGC
CATCGGGAAAAACCCGGGATCTGGCTACGGTGCCGGACTGATGCAGATCGACTCGCAACACCAGGGTGAACTGTCGCAGT
ACGGGATTAAACCGGGACACCTTCTGACTGATGCCTGTCTGAATATTTACACCGGTGCTTATTATCTGGCACTGGCTTTT
AAAAAATGGGGAGTCAGCTGGGAGGCAGTCGGCGCCTACAATGCCGGGTTCCGGAGAACGGACAGGCAGGCCATACGACG
ACTGGAGTACGCCAAGAAGATTGAGGCCATCTACCTGGCTATCAAGAAAAATAAAAATGCCGGCCAGTCATATTTAACAA
AAAACTGA

Protein sequence :
MAGRDYRIDPDLLRAISWQESKWKVNAIGKNPGSGYGAGLMQIDSQHQGELSQYGIKPGHLLTDACLNIYTGAYYLALAF
KKWGVSWEAVGAYNAGFRRTDRQAIRRLEYAKKIEAIYLAIKKNKNAGQSYLTKN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iagB YP_217796.1 cell invasion protein Virulence SPI-1 Protein 7e-12 47
iagB NP_457271.1 cell invasion protein Virulence SPI-1 Protein 3e-12 47
iagB NP_806480.1 cell invasion protein Virulence SPI-1 Protein 3e-12 47
iagB NP_461798.1 invasion protein precursor Virulence SPI-1 Protein 8e-12 47
unnamed AAC31524.1 L0045 Not tested LEE Protein 9e-20 44
unnamed ACU09469.1 putative lytic transglycosylase Not tested LEE Protein 9e-20 44
Z5131 NP_290279.1 hypothetical protein Not tested LEE Protein 1e-19 44
ECs4579 NP_312606.1 hypothetical protein Not tested LEE Protein 1e-19 44
ECO103_3629 YP_003223486.1 hypothetical protein Not tested LEE Protein 8e-20 44
unnamed AAK26704.1 unknown Not tested LEE Protein 6e-20 44
ECO26_5260 YP_003232142.1 hypothetical protein Not tested LEE Protein 8e-20 44
unnamed AAL57531.1 unknown Not tested LEE Protein 6e-20 44
st13 CAC81851.1 ST13 protein Not tested LEE II Protein 6e-20 44
unnamed CAI43885.1 hypothetical protein Not tested LEE Protein 6e-20 44
unnamed AAC38373.1 rOrf3 Not tested LEE Protein 6e-19 43
ECO111_3763 YP_003236099.1 hypothetical protein Not tested LEE Protein 2e-19 43
unnamed AAL06358.1 unknown Not tested LEE Protein 1e-19 43
etgA AFO66324.1 putative lytic transglycosylase Not tested SESS LEE Protein 2e-20 41
etgA AFO66404.1 putative lytic transglycosylase Not tested SESS LEE Protein 2e-20 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pKPR_0089 YP_007988945.1 hypothetical protein VFG0539 Protein 2e-12 47
pKPR_0089 YP_007988945.1 hypothetical protein VFG0823 Protein 4e-20 44
pKPR_0089 YP_007988945.1 hypothetical protein VFG0719 Protein 3e-19 43