Gene Information

Name : pKPR_0022 (pKPR_0022)
Accession : YP_007988878.1
Strain :
Genome accession: NC_021231
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 25404 - 26426 bp
Length : 1023 bp
Strand : +
Note : similar to ShiA homolog from Escherichia coli O6 (tr|Q8FC68)

DNA sequence : 
ATGGAAAACAGATTGCGGTTTGAAGTACAGGACGATTTCGGCTGTTTCGTGTACCCGGATGAACGGTTTGCTCCTTTGCT
GGATGAGTTCGATGATTTGCTCGATACCTATCAGTCCGGCGAGATGAATGATAAACGCTATATTACCGAACTAAACCGTC
TCATCAGACAGGAACCGGACTTTATCGATCTTCATGCACACCTGTCATTTGCCTTCCTGGAGCAGGATAAGCCCAAAAAA
GCACTGGATGCCGCCCTGGCCGGGCTGTCAGCAGGTAACCGACTTATCCCTGAGAATTTTTCAGGTGTTATTGAATGGGG
ATATGTGGAGAATCGTCCGTATCTTCGCGCTCTGCAGGGAGCCATGCTGGCGTATGTGCGATTACGGCGCCATAAAGATG
CGGCCACGCTTATTGATAAGATGCTGGCCTATAACCCAAATGACAATCAGGGAAGTCGCTATCTGCTGGGATCGGAAGTA
TTGCGCACCGGCGACAAAGAACGAGCGGCTAATATTTTTGATGAATACGCCGATGATTATCCACCTTACTGCTACGAGCT
AGCCCTGGTTCATATTCTTAATAAAGACTGGGTTAAAGCTGCAACAGCACTTCGACACGGATTCAGTGCAAACAGTTACA
TTGCCGAAATGCTTTGCGGTAATTTTAACCCGATACCGTTAGCGATATGGCACGGGACTAATTTCGCGGAACCTGAAACG
GCGACGGACTATATAGAAATGTATGGTGAATTGTGGTTTCGTTATCCTGAAGCGCTGGCATTTGTACGCTGGTTATTTAA
CCACTCCAGCGTTATGACTGAACGTGCCTCGCTAATGAAATGTTCTGAGGACCTCTTCAGTGAAAGGGATTTTGATGCCA
GGGGGCAAATTATTGACCGTCAGCGGCAGTTGCTGAATGGAATTGATCATCGGCTTTCCACAAAGATCGTTAAGAAGGTT
AAGAGCAGACAAGGGCAGGAAATCTGGCCGTGGATGCACAGTTTTGGATGGTCATCCGTATGA

Protein sequence : 
MLSTGFDKKISRQVRKMENRLRFEVQDDFGCFVYPDERFAPLLDEFDDLLDTYQSGEMNDKRYITELNRLIRQEPDFIDL
HAHLSFAFLEQDKPKKALDAALAGLSAGNRLIPENFSGVIEWGYVENRPYLRALQGAMLAYVRLRRHKDAATLIDKMLAY
NPNDNQGSRYLLGSEVLRTGDKERAANIFDEYADDYPPYCYELALVHILNKDWVKAATALRHGFSANSYIAEMLCGNFNP
IPLAIWHGTNFAEPETATDYIEMYGELWFRYPEALAFVRWLFNHSSVMTERASLMKCSEDLFSERDFDARGQIIDRQRQL
LNGIDHRLSTKIVKKVKSRQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
shiA AFX83956.1 ShiA family protein Not tested SE-PAI Protein 1e-85 59
shiA NP_839237.1 hypothetical protein Virulence SHI-2 Protein 1e-82 58
shiA NP_709438.1 hypothetical protein Virulence SHI-2 Protein 1e-82 58
aec34 AAW51717.1 Aec34 Not tested AGI-3 Protein 1e-82 58
shiA AAD44731.1 ShiA Virulence SHI-2 Protein 8e-83 58
c3557 NP_755432.1 ShiA-like protein Not tested PAI I CFT073 Protein 5e-82 56
ECUMN_3323 YP_002414005.1 SHI-2 pathogenicity island protein Virulence Not named Protein 5e-84 56

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pKPR_0022 YP_007988878.1 hypothetical protein VFG0599 Protein 5e-83 58
pKPR_0022 YP_007988878.1 hypothetical protein VFG1694 Protein 2e-82 56