Gene Information

Name : LBP_cg0035 (LBP_cg0035)
Accession : YP_007985712.1
Strain : Lactobacillus plantarum P-8
Genome accession: NC_021224
Putative virulence/resistance : Unknown
Product : Ribosomal RNA large subunit methyltransferase H
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 45618 - 46097 bp
Length : 480 bp
Strand : +
Note : -

DNA sequence :
ATGAACATCAAAATTATCTGTGTCGGGAAATTAAAAGAGAAATACTTCAAACAGGGGATTGCGGAATATGCGAAAAGAAT
GAGTAAATTTGCAAAATTCCAGATTGTTGAAGTGCCAGATGAAAAGGCTCCAGAGTCATTAAGTAACGCAGAGATGGAAA
ATGTGAAGGCCAAAGAGGGCCAACGGATCCTAGAAAAGATCAAGGATCGCGATTACGTATACGCGCTAGCAATTTTGGGC
AAAGAACGCTCGAGTGAAGAATTTGCGGCGGAAATTGATAAACTAACGACGTATGGTCACAGTGATATTGATTTCGTAAT
CGGTGGTTCGCTGGGATTATCACCGGAAGTGCTGAAGCGCGCGGATACTCAGATTTCGTTTGGGCGTTTCACGTTACCTC
ACCAATTAATGCGGTTAGTGCTGTCGGAGCAGGTTTATCGGGCGTTTATGATTAATGTGGGAAGTCCGTACCATAAGTGA

Protein sequence :
MNIKIICVGKLKEKYFKQGIAEYAKRMSKFAKFQIVEVPDEKAPESLSNAEMENVKAKEGQRILEKIKDRDYVYALAILG
KERSSEEFAAEIDKLTTYGHSDIDFVIGGSLGLSPEVLKRADTQISFGRFTLPHQLMRLVLSEQVYRAFMINVGSPYHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 2e-40 58
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 2e-40 58
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 2e-40 58
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 2e-40 58
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 2e-40 58
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 2e-40 58
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 2e-40 58
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 2e-40 58
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 2e-40 58
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 2e-40 58
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 2e-40 58
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 2e-40 58
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 2e-40 58
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 2e-40 58
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 8e-40 56
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 8e-40 56
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 3e-40 56
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 5e-36 56
unnamed ACL99851.1 hypothetical protein Not tested Type-V SCCmec Protein 4e-23 55